Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
LIMS3P0CW19 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMS3P0CW19 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
LIMS3P0CW19 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.27■□□□□ 0.68
LIMS3P0CW19 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS3P0CW19 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
LIMS3P0CW19 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMS3P0CW19 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMS3P0CW19 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS3P0CW19 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS3P0CW19 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMS3P0CW19 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMS3P0CW19 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.25■□□□□ 0.67
LIMS3P0CW19 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LIMS3P0CW19 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIMS3P0CW19 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS3P0CW19 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 AC103834.1-201ENST00000520383 144 ntBASIC19.24■□□□□ 0.67
LIMS3P0CW19 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS3P0CW19 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIMS3P0CW19 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS3P0CW19 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LIMS3P0CW19 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 TSPY13P-201ENST00000338964 914 ntBASIC19.22■□□□□ 0.67
LIMS3P0CW19 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 AC103724.3-201ENST00000564481 992 ntBASIC19.22■□□□□ 0.67
LIMS3P0CW19 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms