Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.67■■□□□ 1.7
HLA-DOAP06340 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
HLA-DOAP06340 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
HLA-DOAP06340 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.66■■□□□ 1.7
HLA-DOAP06340 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
HLA-DOAP06340 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
HLA-DOAP06340 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
HLA-DOAP06340 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
HLA-DOAP06340 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
HLA-DOAP06340 AC093323.1-202ENST00000635031 2045 ntBASIC25.65■■□□□ 1.7
HLA-DOAP06340 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
HLA-DOAP06340 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
HLA-DOAP06340 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HLA-DOAP06340 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
HLA-DOAP06340 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
HLA-DOAP06340 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC25.64■■□□□ 1.7
HLA-DOAP06340 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.64■■□□□ 1.7
HLA-DOAP06340 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
HLA-DOAP06340 AC080038.1-201ENST00000611274 1154 ntBASIC25.64■■□□□ 1.7
HLA-DOAP06340 GAS2L1P2-201ENST00000436355 1356 ntBASIC25.64■■□□□ 1.69
HLA-DOAP06340 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
HLA-DOAP06340 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
HLA-DOAP06340 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.64■■□□□ 1.69
HLA-DOAP06340 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HLA-DOAP06340 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HLA-DOAP06340 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.63■■□□□ 1.69
HLA-DOAP06340 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.63■■□□□ 1.69
HLA-DOAP06340 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.63■■□□□ 1.69
HLA-DOAP06340 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 KRT87P-202ENST00000534226 1464 ntBASIC25.62■■□□□ 1.69
HLA-DOAP06340 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
HLA-DOAP06340 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
HLA-DOAP06340 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.62■■□□□ 1.69
HLA-DOAP06340 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
HLA-DOAP06340 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
HLA-DOAP06340 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
HLA-DOAP06340 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
HLA-DOAP06340 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
HLA-DOAP06340 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
HLA-DOAP06340 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
HLA-DOAP06340 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
HLA-DOAP06340 BID-214ENST00000617586 542 ntTSL 5 BASIC25.6■■□□□ 1.69
HLA-DOAP06340 WWOX-218ENST00000627394 894 ntTSL 5 BASIC25.6■■□□□ 1.69
HLA-DOAP06340 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 ESRRAP2-201ENST00000418437 1549 ntBASIC25.59■■□□□ 1.69
HLA-DOAP06340 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 KRT18P11-201ENST00000435214 1283 ntBASIC25.59■■□□□ 1.69
HLA-DOAP06340 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 OR7E47P-201ENST00000546390 1422 ntBASIC25.59■■□□□ 1.69
HLA-DOAP06340 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
HLA-DOAP06340 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HLA-DOAP06340 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC25.58■■□□□ 1.69
HLA-DOAP06340 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.58■■□□□ 1.69
HLA-DOAP06340 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.58■■□□□ 1.69
HLA-DOAP06340 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
HLA-DOAP06340 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.58■■□□□ 1.69
HLA-DOAP06340 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms