Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP4O75161 GAS7-202ENST00000396115 929 ntTSL 5 BASIC31.07■■■□□ 2.56
NPHP4O75161 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC31.07■■■□□ 2.56
NPHP4O75161 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC31.07■■■□□ 2.56
NPHP4O75161 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP4O75161 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC31.06■■■□□ 2.56
NPHP4O75161 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP4O75161 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP4O75161 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP4O75161 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
NPHP4O75161 BET1L-204ENST00000410108 637 ntTSL 3 BASIC31.06■■■□□ 2.56
NPHP4O75161 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP4O75161 AC128676.1-201ENST00000454392 318 ntBASIC31.06■■■□□ 2.56
NPHP4O75161 AC007322.4-201ENST00000509611 723 ntBASIC31.06■■■□□ 2.56
NPHP4O75161 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC31.06■■■□□ 2.56
NPHP4O75161 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC31.06■■■□□ 2.56
NPHP4O75161 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC31.06■■■□□ 2.56
NPHP4O75161 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
NPHP4O75161 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
NPHP4O75161 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
NPHP4O75161 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP4O75161 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP4O75161 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP4O75161 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC31.05■■■□□ 2.56
NPHP4O75161 UNC93B4-201ENST00000505679 747 ntBASIC31.05■■■□□ 2.56
NPHP4O75161 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
NPHP4O75161 OR10C1-204ENST00000622521 1039 ntBASIC31.05■■■□□ 2.56
NPHP4O75161 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP4O75161 PXK-203ENST00000383715 1756 ntTSL 5 BASIC31.04■■■□□ 2.56
NPHP4O75161 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP4O75161 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC31.04■■■□□ 2.56
NPHP4O75161 AC138907.5-202ENST00000569484 235 ntBASIC31.04■■■□□ 2.56
NPHP4O75161 MMD2-204ENST00000612910 778 ntTSL 5 BASIC31.04■■■□□ 2.56
NPHP4O75161 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP4O75161 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP4O75161 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP4O75161 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC31.03■■■□□ 2.56
NPHP4O75161 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP4O75161 USP45-205ENST00000472914 1617 ntTSL 5 BASIC31.03■■■□□ 2.56
NPHP4O75161 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP4O75161 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC31.03■■■□□ 2.56
NPHP4O75161 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC31.03■■■□□ 2.56
NPHP4O75161 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC31.03■■■□□ 2.56
NPHP4O75161 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC31.03■■■□□ 2.56
NPHP4O75161 AC135731.1-201ENST00000569415 2548 ntBASIC31.03■■■□□ 2.56
NPHP4O75161 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
NPHP4O75161 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP4O75161 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC31.02■■■□□ 2.56
NPHP4O75161 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC31.02■■■□□ 2.56
NPHP4O75161 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC31.02■■■□□ 2.56
NPHP4O75161 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC31.02■■■□□ 2.56
NPHP4O75161 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP4O75161 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
NPHP4O75161 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC31.01■■■□□ 2.55
NPHP4O75161 TERF1P5-201ENST00000477545 1207 ntBASIC31.01■■■□□ 2.55
NPHP4O75161 USP36-216ENST00000589424 970 ntTSL 5 BASIC31.01■■■□□ 2.55
NPHP4O75161 AC016405.3-201ENST00000607710 860 ntBASIC31.01■■■□□ 2.55
NPHP4O75161 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC31.01■■■□□ 2.55
NPHP4O75161 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC31■■■□□ 2.55
NPHP4O75161 BMP1-204ENST00000397814 836 ntTSL 4 BASIC31■■■□□ 2.55
NPHP4O75161 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC31■■■□□ 2.55
NPHP4O75161 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC31■■■□□ 2.55
NPHP4O75161 MMAB-206ENST00000540016 945 ntTSL 3 BASIC31■■■□□ 2.55
NPHP4O75161 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC31■■■□□ 2.55
NPHP4O75161 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC31■■■□□ 2.55
NPHP4O75161 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC31■■■□□ 2.55
NPHP4O75161 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NPHP4O75161 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP4O75161 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP4O75161 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP4O75161 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP4O75161 PLLP-204ENST00000569059 665 ntTSL 3 BASIC30.99■■■□□ 2.55
NPHP4O75161 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP4O75161 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
NPHP4O75161 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC30.99■■■□□ 2.55
NPHP4O75161 AC055733.4-201ENST00000638462 1354 ntBASIC30.99■■■□□ 2.55
NPHP4O75161 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC30.98■■■□□ 2.55
NPHP4O75161 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC30.98■■■□□ 2.55
NPHP4O75161 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC30.98■■■□□ 2.55
NPHP4O75161 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.98■■■□□ 2.55
NPHP4O75161 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP4O75161 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP4O75161 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC30.98■■■□□ 2.55
NPHP4O75161 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP4O75161 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
NPHP4O75161 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
NPHP4O75161 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP4O75161 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
NPHP4O75161 AL512625.2-201ENST00000417533 625 ntBASIC30.97■■■□□ 2.55
NPHP4O75161 BX276092.2-201ENST00000417668 665 ntBASIC30.97■■■□□ 2.55
NPHP4O75161 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC30.97■■■□□ 2.55
NPHP4O75161 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP4O75161 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.97■■■□□ 2.55
NPHP4O75161 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP4O75161 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP4O75161 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP4O75161 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP4O75161 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC30.96■■■□□ 2.55
NPHP4O75161 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC30.96■■■□□ 2.55
NPHP4O75161 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC30.96■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms