Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.32■■□□□ 1
TRIM13O60858 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.32■■□□□ 1
TRIM13O60858 KRT125P-201ENST00000546827 989 ntBASIC21.32■■□□□ 1
TRIM13O60858 AL499627.2-201ENST00000606283 725 ntBASIC21.32■■□□□ 1
TRIM13O60858 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRIM13O60858 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRIM13O60858 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM13O60858 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
TRIM13O60858 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM13O60858 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TRIM13O60858 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
TRIM13O60858 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 Z92544.1-202ENST00000571933 1220 ntBASIC21.31■■□□□ 1
TRIM13O60858 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.31■■□□□ 1
TRIM13O60858 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM13O60858 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.31■■□□□ 1
TRIM13O60858 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
TRIM13O60858 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.3■■□□□ 1
TRIM13O60858 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.3■■□□□ 1
TRIM13O60858 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.3■■□□□ 1
TRIM13O60858 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.3■■□□□ 1
TRIM13O60858 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.3■■□□□ 1
TRIM13O60858 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM13O60858 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.3■■□□□ 1
TRIM13O60858 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.29■■□□□ 1
TRIM13O60858 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM13O60858 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM13O60858 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM13O60858 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM13O60858 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM13O60858 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM13O60858 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
TRIM13O60858 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.29■■□□□ 1
TRIM13O60858 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRIM13O60858 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.28■■□□□ 1
TRIM13O60858 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
TRIM13O60858 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.28■■□□□ 1
TRIM13O60858 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.28■■□□□ 1
TRIM13O60858 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRIM13O60858 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM13O60858 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.28■■□□□ 1
TRIM13O60858 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.27■■□□□ 1
TRIM13O60858 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 MIR4787-201ENST00000607364 84 ntBASIC21.27■■□□□ 1
TRIM13O60858 AC010997.5-201ENST00000609182 354 ntBASIC21.27■■□□□ 1
TRIM13O60858 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM13O60858 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TRIM13O60858 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.27■□□□□ 0.99
TRIM13O60858 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 Z98882.1-201ENST00000622160 2253 ntBASIC21.26■□□□□ 0.99
TRIM13O60858 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM13O60858 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM13O60858 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
TRIM13O60858 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM13O60858 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM13O60858 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
TRIM13O60858 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM13O60858 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM13O60858 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
TRIM13O60858 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM13O60858 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM13O60858 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM13O60858 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
TRIM13O60858 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM13O60858 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRIM13O60858 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
TRIM13O60858 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms