Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 AC211429.1-201ENST00000415277 523 ntBASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 LINC01023-201ENST00000606054 436 ntBASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 AC068587.7-201ENST00000641602 218 ntBASIC19.78■□□□□ 0.76
COL6A6A6NMZ7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 CYP2T1P-201ENST00000432607 1285 ntBASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A6A6NMZ7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
COL6A6A6NMZ7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.77■□□□□ 0.75
COL6A6A6NMZ7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.77■□□□□ 0.75
COL6A6A6NMZ7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.77■□□□□ 0.75
COL6A6A6NMZ7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.77■□□□□ 0.75
COL6A6A6NMZ7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 AP001160.3-201ENST00000601484 763 ntBASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 MIR4497-201ENST00000583208 89 ntBASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A6A6NMZ7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 MIR718-201ENST00000390190 70 ntBASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 AC026366.1-201ENST00000488803 879 ntBASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A6A6NMZ7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 UBE2SP1-201ENST00000450587 669 ntBASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A6A6NMZ7 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 AC004687.1-201ENST00000579003 1625 ntBASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL6A6A6NMZ7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AL512625.2-201ENST00000417533 625 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 MIPEPP3-201ENST00000412105 444 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AC007322.4-201ENST00000509611 723 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AC091874.3-201ENST00000512672 1195 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AP003097.1-201ENST00000530657 1135 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 AC016405.3-201ENST00000607710 860 ntBASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL6A6A6NMZ7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 AC009237.3-201ENST00000393279 1427 ntBASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms