Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CTDP1Q9Y5B0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
CTDP1Q9Y5B0 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.2■■□□□ 1.62
CTDP1Q9Y5B0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTDP1Q9Y5B0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 AC016769.1-201ENST00000409132 1010 ntBASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTDP1Q9Y5B0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 AC092068.2-201ENST00000590491 1708 ntBASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CTDP1Q9Y5B0 DUSP8P3-201ENST00000399571 1760 ntBASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 AC137761.2-201ENST00000561729 223 ntBASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 AC145350.3-201ENST00000569033 163 ntBASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
CTDP1Q9Y5B0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CTDP1Q9Y5B0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CTDP1Q9Y5B0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC25.14■■□□□ 1.62
CTDP1Q9Y5B0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CTDP1Q9Y5B0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.14■■□□□ 1.62
CTDP1Q9Y5B0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CTDP1Q9Y5B0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CTDP1Q9Y5B0 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.14■■□□□ 1.61
CTDP1Q9Y5B0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.61
CTDP1Q9Y5B0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CTDP1Q9Y5B0 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CTDP1Q9Y5B0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 AC079140.4-201ENST00000507448 529 ntBASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CTDP1Q9Y5B0 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CTDP1Q9Y5B0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.1■■□□□ 1.61
CTDP1Q9Y5B0 TESC-206ENST00000541210 936 ntTSL 3 BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms