Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 AC233992.3-201ENST00000607491 485 ntBASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 EDA-201ENST00000338901 1233 ntBASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 AP005435.1-201ENST00000529293 1178 ntBASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 AC008764.7-201ENST00000593779 1081 ntBASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 AC005837.3-201ENST00000612163 286 ntBASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4BQ9Y4P1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4BQ9Y4P1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.59■□□□□ 0.89
ATG4BQ9Y4P1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ATG4BQ9Y4P1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.59■□□□□ 0.89
ATG4BQ9Y4P1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4BQ9Y4P1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 LINC00526-201ENST00000581067 1875 ntBASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 AC010141.3-201ENST00000456659 717 ntBASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 AP001330.3-201ENST00000520123 633 ntBASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 AL031432.3-201ENST00000607698 485 ntBASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 AL355001.2-201ENST00000620617 1191 ntBASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ATG4BQ9Y4P1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4BQ9Y4P1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4BQ9Y4P1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4BQ9Y4P1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.58■□□□□ 0.88
ATG4BQ9Y4P1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.58■□□□□ 0.88
ATG4BQ9Y4P1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 AC087239.1-201ENST00000622671 572 ntBASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4BQ9Y4P1 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 AC099791.1-201ENST00000416440 715 ntBASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 AC079089.2-201ENST00000531211 1277 ntBASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
ATG4BQ9Y4P1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 AC079834.2-201ENST00000609776 1949 ntBASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 AF213884.3-201ENST00000563833 479 ntBASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 AC126544.1-201ENST00000580842 1059 ntBASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4BQ9Y4P1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms