Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 AC139530.1-201ENST00000575312 1977 ntBASIC20.65■□□□□ 0.9
SCN3AQ9NY46 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 LINC00526-201ENST00000581067 1875 ntBASIC20.65■□□□□ 0.9
SCN3AQ9NY46 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN3AQ9NY46 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SCN3AQ9NY46 AC080038.3-201ENST00000623346 1952 ntBASIC20.64■□□□□ 0.9
SCN3AQ9NY46 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN3AQ9NY46 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN3AQ9NY46 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 AC127496.7-201ENST00000625110 1798 ntBASIC20.64■□□□□ 0.89
SCN3AQ9NY46 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN3AQ9NY46 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.63■□□□□ 0.89
SCN3AQ9NY46 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 AC026271.2-201ENST00000428091 497 ntBASIC20.63■□□□□ 0.89
SCN3AQ9NY46 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 RARRES2P6-201ENST00000567333 442 ntBASIC20.63■□□□□ 0.89
SCN3AQ9NY46 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.63■□□□□ 0.89
SCN3AQ9NY46 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN3AQ9NY46 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 AC012676.1-201ENST00000574705 1949 ntBASIC20.61■□□□□ 0.89
SCN3AQ9NY46 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN3AQ9NY46 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN3AQ9NY46 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 AC137767.1-201ENST00000602918 1920 ntBASIC20.59■□□□□ 0.89
SCN3AQ9NY46 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 AC027612.3-201ENST00000413684 1047 ntBASIC20.59■□□□□ 0.89
SCN3AQ9NY46 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 AC010141.3-201ENST00000456659 717 ntBASIC20.59■□□□□ 0.89
SCN3AQ9NY46 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN3AQ9NY46 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms