Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 EP400NL-214ENST00000641289 2402 ntBASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC3Q9NQT5 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.78
EXOSC3Q9NQT5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 AP005435.1-201ENST00000529293 1178 ntBASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC3Q9NQT5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 SLC47A1P1-202ENST00000449666 945 ntBASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 AC010141.3-201ENST00000456659 717 ntBASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 AC079089.2-201ENST00000531211 1277 ntBASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
EXOSC3Q9NQT5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 AL136162.1-201ENST00000607711 1078 ntBASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
EXOSC3Q9NQT5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 AC135279.3-201ENST00000610945 1311 ntBASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 MIR4767-201ENST00000582827 78 ntBASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EXOSC3Q9NQT5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 BX842568.3-201ENST00000418104 571 ntBASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 AC024257.2-201ENST00000549699 147 ntBASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EXOSC3Q9NQT5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms