Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP42Q9H9J4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
USP42Q9H9J4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
USP42Q9H9J4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USP42Q9H9J4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 MDK-213ENST00000617138 635 ntTSL 2 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 TMEM191A-211ENST00000637163 1067 ntBASIC27.87■■■□□ 2.05
USP42Q9H9J4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
USP42Q9H9J4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC27.86■■■□□ 2.05
USP42Q9H9J4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
USP42Q9H9J4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC27.86■■■□□ 2.05
USP42Q9H9J4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
USP42Q9H9J4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
USP42Q9H9J4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC27.86■■■□□ 2.05
USP42Q9H9J4 AC010141.3-201ENST00000456659 717 ntBASIC27.86■■■□□ 2.05
USP42Q9H9J4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC27.86■■■□□ 2.05
USP42Q9H9J4 AC142086.2-201ENST00000569753 217 ntBASIC27.86■■■□□ 2.05
USP42Q9H9J4 MFSD11-216ENST00000590393 1141 ntBASIC27.86■■■□□ 2.05
USP42Q9H9J4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC27.86■■■□□ 2.05
USP42Q9H9J4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
USP42Q9H9J4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC27.85■■■□□ 2.05
USP42Q9H9J4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
USP42Q9H9J4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC27.85■■■□□ 2.05
USP42Q9H9J4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC27.85■■■□□ 2.05
USP42Q9H9J4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 AC079140.4-201ENST00000507448 529 ntBASIC27.85■■■□□ 2.05
USP42Q9H9J4 AL050303.2-201ENST00000619798 666 ntBASIC27.85■■■□□ 2.05
USP42Q9H9J4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
USP42Q9H9J4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
USP42Q9H9J4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
USP42Q9H9J4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
USP42Q9H9J4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC27.84■■■□□ 2.05
USP42Q9H9J4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
USP42Q9H9J4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27.83■■■□□ 2.05
USP42Q9H9J4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.83■■■□□ 2.05
USP42Q9H9J4 CD99P1-205ENST00000527459 561 ntBASIC27.83■■■□□ 2.05
USP42Q9H9J4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USP42Q9H9J4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
USP42Q9H9J4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USP42Q9H9J4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
USP42Q9H9J4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 AC087239.1-201ENST00000622671 572 ntBASIC27.82■■■□□ 2.04
USP42Q9H9J4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
USP42Q9H9J4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
USP42Q9H9J4 APTR-205ENST00000447009 902 ntTSL 2 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
USP42Q9H9J4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
USP42Q9H9J4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USP42Q9H9J4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
USP42Q9H9J4 AC079630.1-202ENST00000618127 1840 ntBASIC27.81■■■□□ 2.04
USP42Q9H9J4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
USP42Q9H9J4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
USP42Q9H9J4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC27.8■■■□□ 2.04
USP42Q9H9J4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC27.79■■■□□ 2.04
USP42Q9H9J4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC27.79■■■□□ 2.04
USP42Q9H9J4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC27.79■■■□□ 2.04
USP42Q9H9J4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
USP42Q9H9J4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC27.78■■■□□ 2.04
USP42Q9H9J4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC27.78■■■□□ 2.04
USP42Q9H9J4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP42Q9H9J4 GUSBP6-202ENST00000438529 1198 ntBASIC27.77■■■□□ 2.04
USP42Q9H9J4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP42Q9H9J4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP42Q9H9J4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP42Q9H9J4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USP42Q9H9J4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC27.77■■■□□ 2.04
USP42Q9H9J4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP42Q9H9J4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC27.76■■■□□ 2.03
USP42Q9H9J4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms