Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 AC091305.1-201ENST00000479476 895 ntBASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 AC068587.7-201ENST00000641602 218 ntBASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCIF1Q9H4Z3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 AC010141.3-201ENST00000456659 717 ntBASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
PCIF1Q9H4Z3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCIF1Q9H4Z3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 AL117328.2-201ENST00000624617 1940 ntBASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 AC139530.1-201ENST00000575312 1977 ntBASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 TSPY26P-201ENST00000476365 1326 ntBASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCIF1Q9H4Z3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 AC087239.1-201ENST00000622671 572 ntBASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCIF1Q9H4Z3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 IGHV3-19-201ENST00000521488 291 ntBASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PCIF1Q9H4Z3 EP400NL-214ENST00000641289 2402 ntBASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 AC079089.2-201ENST00000531211 1277 ntBASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCIF1Q9H4Z3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms