Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN3Q9H347 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
UBQLN3Q9H347 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
UBQLN3Q9H347 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 OR2I1P-207ENST00000453522 948 ntBASIC20.14■□□□□ 0.81
UBQLN3Q9H347 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.14■□□□□ 0.81
UBQLN3Q9H347 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
UBQLN3Q9H347 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.12■□□□□ 0.81
UBQLN3Q9H347 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 AC137767.1-201ENST00000602918 1920 ntBASIC20.11■□□□□ 0.81
UBQLN3Q9H347 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
UBQLN3Q9H347 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBQLN3Q9H347 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 MIR935-201ENST00000401179 91 ntBASIC20.09■□□□□ 0.81
UBQLN3Q9H347 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBQLN3Q9H347 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms