Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CFAP54Q96N23 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CFAP54Q96N23 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.58■■□□□ 1.04
CFAP54Q96N23 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.58■■□□□ 1.04
CFAP54Q96N23 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CFAP54Q96N23 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.57■■□□□ 1.04
CFAP54Q96N23 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 MIR718-201ENST00000390190 70 ntBASIC21.57■■□□□ 1.04
CFAP54Q96N23 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CFAP54Q96N23 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 REXO1L12P-201ENST00000622156 912 ntBASIC21.56■■□□□ 1.04
CFAP54Q96N23 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CFAP54Q96N23 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 MYC-209ENST00000641252 345 ntBASIC21.56■■□□□ 1.04
CFAP54Q96N23 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CFAP54Q96N23 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 KRT87P-202ENST00000534226 1464 ntBASIC21.55■■□□□ 1.04
CFAP54Q96N23 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CFAP54Q96N23 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CFAP54Q96N23 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.54■■□□□ 1.04
CFAP54Q96N23 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CFAP54Q96N23 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CFAP54Q96N23 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 AC026366.1-201ENST00000488803 879 ntBASIC21.53■■□□□ 1.04
CFAP54Q96N23 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CFAP54Q96N23 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
CFAP54Q96N23 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CFAP54Q96N23 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.53■■□□□ 1.04
CFAP54Q96N23 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CFAP54Q96N23 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 AC022211.4-201ENST00000625094 2161 ntBASIC21.52■■□□□ 1.04
CFAP54Q96N23 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CFAP54Q96N23 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.52■■□□□ 1.04
CFAP54Q96N23 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CFAP54Q96N23 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CFAP54Q96N23 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.52■■□□□ 1.03
CFAP54Q96N23 UBE2SP1-201ENST00000450587 669 ntBASIC21.52■■□□□ 1.03
CFAP54Q96N23 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.52■■□□□ 1.03
CFAP54Q96N23 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.51■■□□□ 1.03
CFAP54Q96N23 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CFAP54Q96N23 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CFAP54Q96N23 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.51■■□□□ 1.03
CFAP54Q96N23 AC079140.4-201ENST00000507448 529 ntBASIC21.51■■□□□ 1.03
CFAP54Q96N23 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CFAP54Q96N23 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CFAP54Q96N23 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.51■■□□□ 1.03
CFAP54Q96N23 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms