Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CMTM3Q96MX0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CMTM3Q96MX0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 AC120024.1-201ENST00000562672 995 ntBASIC18.68■□□□□ 0.58
CMTM3Q96MX0 DUX4L4-201ENST00000566884 1269 ntBASIC18.68■□□□□ 0.58
CMTM3Q96MX0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 AL157384.1-201ENST00000445995 2473 ntBASIC18.68■□□□□ 0.58
CMTM3Q96MX0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CMTM3Q96MX0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.67■□□□□ 0.58
CMTM3Q96MX0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 MIR4449-201ENST00000578365 66 ntBASIC18.66■□□□□ 0.58
CMTM3Q96MX0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.66■□□□□ 0.58
CMTM3Q96MX0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CMTM3Q96MX0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 KRT18P24-201ENST00000344739 1156 ntBASIC18.65■□□□□ 0.58
CMTM3Q96MX0 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 MIR4281-201ENST00000580852 62 ntBASIC18.65■□□□□ 0.58
CMTM3Q96MX0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 AF106564.1-201ENST00000607058 2553 ntBASIC18.65■□□□□ 0.58
CMTM3Q96MX0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CMTM3Q96MX0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms