Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 AC142381.2-201ENST00000566120 298 ntBASIC20.71■□□□□ 0.91
VMP1Q96GC9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
VMP1Q96GC9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.7■□□□□ 0.91
VMP1Q96GC9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.7■□□□□ 0.91
VMP1Q96GC9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 AL031432.3-201ENST00000607698 485 ntBASIC20.7■□□□□ 0.9
VMP1Q96GC9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.7■□□□□ 0.9
VMP1Q96GC9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VMP1Q96GC9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VMP1Q96GC9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.69■□□□□ 0.9
VMP1Q96GC9 AC133637.1-201ENST00000624115 1537 ntBASIC20.68■□□□□ 0.9
VMP1Q96GC9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 SUDS3P1-201ENST00000505831 966 ntBASIC20.68■□□□□ 0.9
VMP1Q96GC9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.68■□□□□ 0.9
VMP1Q96GC9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VMP1Q96GC9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 AP001330.3-201ENST00000520123 633 ntBASIC20.67■□□□□ 0.9
VMP1Q96GC9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VMP1Q96GC9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VMP1Q96GC9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VMP1Q96GC9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 AF213884.3-201ENST00000563833 479 ntBASIC20.66■□□□□ 0.9
VMP1Q96GC9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VMP1Q96GC9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VMP1Q96GC9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VMP1Q96GC9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.66■□□□□ 0.9
VMP1Q96GC9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.65■□□□□ 0.9
VMP1Q96GC9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.65■□□□□ 0.9
VMP1Q96GC9 AL353803.4-201ENST00000565882 1934 ntBASIC20.65■□□□□ 0.9
VMP1Q96GC9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VMP1Q96GC9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms