Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
TTC28Q96AY4 AC012306.2-201ENST00000609350 630 ntBASIC22.58■■□□□ 1.21
TTC28Q96AY4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
TTC28Q96AY4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.58■■□□□ 1.21
TTC28Q96AY4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
TTC28Q96AY4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC22.58■■□□□ 1.2
TTC28Q96AY4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TTC28Q96AY4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.57■■□□□ 1.2
TTC28Q96AY4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.57■■□□□ 1.2
TTC28Q96AY4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC22.57■■□□□ 1.2
TTC28Q96AY4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.57■■□□□ 1.2
TTC28Q96AY4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
TTC28Q96AY4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TTC28Q96AY4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TTC28Q96AY4 AC016405.3-201ENST00000607710 860 ntBASIC22.57■■□□□ 1.2
TTC28Q96AY4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TTC28Q96AY4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 TMPOP1-202ENST00000424642 1267 ntBASIC22.56■■□□□ 1.2
TTC28Q96AY4 AL359736.2-201ENST00000621992 437 ntBASIC22.56■■□□□ 1.2
TTC28Q96AY4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 OR10C1-204ENST00000622521 1039 ntBASIC22.56■■□□□ 1.2
TTC28Q96AY4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.56■■□□□ 1.2
TTC28Q96AY4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
TTC28Q96AY4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
TTC28Q96AY4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
TTC28Q96AY4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.55■■□□□ 1.2
TTC28Q96AY4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.55■■□□□ 1.2
TTC28Q96AY4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TTC28Q96AY4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
TTC28Q96AY4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
TTC28Q96AY4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.54■■□□□ 1.2
TTC28Q96AY4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.54■■□□□ 1.2
TTC28Q96AY4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.54■■□□□ 1.2
TTC28Q96AY4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 POU5F1P4-201ENST00000413175 1085 ntBASIC22.54■■□□□ 1.2
TTC28Q96AY4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.54■■□□□ 1.2
TTC28Q96AY4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TTC28Q96AY4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 AL512625.2-201ENST00000417533 625 ntBASIC22.53■■□□□ 1.2
TTC28Q96AY4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.53■■□□□ 1.2
TTC28Q96AY4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TTC28Q96AY4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 AC097658.1-201ENST00000475555 843 ntBASIC22.52■■□□□ 1.2
TTC28Q96AY4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.52■■□□□ 1.2
TTC28Q96AY4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.52■■□□□ 1.2
TTC28Q96AY4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TTC28Q96AY4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.52■■□□□ 1.2
TTC28Q96AY4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
TTC28Q96AY4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TTC28Q96AY4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
TTC28Q96AY4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TTC28Q96AY4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TTC28Q96AY4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.51■■□□□ 1.19
TTC28Q96AY4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.51■■□□□ 1.19
TTC28Q96AY4 AC008694.1-202ENST00000636953 945 ntBASIC22.51■■□□□ 1.19
TTC28Q96AY4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TTC28Q96AY4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TTC28Q96AY4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.5■■□□□ 1.19
TTC28Q96AY4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms