Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 AL109923.1-201ENST00000618799 583 ntBASIC21.91■■□□□ 1.1
HMGB4Q8WW32 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
HMGB4Q8WW32 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 MIR663A-201ENST00000385250 93 ntBASIC21.9■■□□□ 1.1
HMGB4Q8WW32 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB4Q8WW32 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
HMGB4Q8WW32 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.88■■□□□ 1.09
HMGB4Q8WW32 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB4Q8WW32 DUSP8P3-201ENST00000399571 1760 ntBASIC21.87■■□□□ 1.09
HMGB4Q8WW32 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
HMGB4Q8WW32 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 AC005224.4-201ENST00000583262 1652 ntBASIC21.86■■□□□ 1.09
HMGB4Q8WW32 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 NCF1B-203ENST00000435988 1254 ntBASIC21.86■■□□□ 1.09
HMGB4Q8WW32 AC104187.1-201ENST00000607510 612 ntBASIC21.86■■□□□ 1.09
HMGB4Q8WW32 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
HMGB4Q8WW32 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB4Q8WW32 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 KRT87P-202ENST00000534226 1464 ntBASIC21.84■■□□□ 1.09
HMGB4Q8WW32 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 MFSD11-216ENST00000590393 1141 ntBASIC21.84■■□□□ 1.09
HMGB4Q8WW32 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
HMGB4Q8WW32 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms