Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AL353803.4-201ENST00000565882 1934 ntBASIC6.65□□□□□ -1.34
SYNE1Q8NF91 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC104771.1-201ENST00000603335 964 ntBASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 DUX4L4-201ENST00000566884 1269 ntBASIC6.65□□□□□ -1.34
SYNE1Q8NF91 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC079630.1-202ENST00000618127 1840 ntBASIC6.65□□□□□ -1.35
SYNE1Q8NF91 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 ESRRAP2-201ENST00000418437 1549 ntBASIC6.65□□□□□ -1.35
SYNE1Q8NF91 AC004854.2-201ENST00000608450 1441 ntBASIC6.65□□□□□ -1.35
SYNE1Q8NF91 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC6.65□□□□□ -1.35
SYNE1Q8NF91 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 EMC9-206ENST00000560403 872 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 EI24-211ENST00000534546 1544 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
SYNE1Q8NF91 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SYNE1Q8NF91 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms