Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CCDC60Q8IWA6 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
CCDC60Q8IWA6 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 DUSP8P5-201ENST00000422884 1815 ntBASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC60Q8IWA6 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC60Q8IWA6 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 KRT18P61-201ENST00000585825 1298 ntBASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 NTF6G-201ENST00000591094 616 ntBASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC60Q8IWA6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 AC022517.1-201ENST00000592429 346 ntBASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC60Q8IWA6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 IKBKGP1-201ENST00000612193 1073 ntBASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 AC087742.1-201ENST00000575880 1738 ntBASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC60Q8IWA6 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 AC079089.2-201ENST00000531211 1277 ntBASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
CCDC60Q8IWA6 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.24■■□□□ 1.47
CCDC60Q8IWA6 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.24■■□□□ 1.47
CCDC60Q8IWA6 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.23■■□□□ 1.47
CCDC60Q8IWA6 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC60Q8IWA6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms