Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 MIR6724-1-201ENST00000616420 92 ntBASIC21.27■■□□□ 1
PKNOX1P55347 MIR6724-2-201ENST00000616483 92 ntBASIC21.27■■□□□ 1
PKNOX1P55347 MIR6724-4-201ENST00000617390 92 ntBASIC21.27■■□□□ 1
PKNOX1P55347 MIR6724-3-201ENST00000622482 92 ntBASIC21.27■■□□□ 1
PKNOX1P55347 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PKNOX1P55347 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.27■■□□□ 1
PKNOX1P55347 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
PKNOX1P55347 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PKNOX1P55347 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
PKNOX1P55347 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 CA15P2-201ENST00000611168 834 ntBASIC21.26■□□□□ 0.99
PKNOX1P55347 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PKNOX1P55347 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.26■□□□□ 0.99
PKNOX1P55347 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKNOX1P55347 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.26■□□□□ 0.99
PKNOX1P55347 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
PKNOX1P55347 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.25■□□□□ 0.99
PKNOX1P55347 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.25■□□□□ 0.99
PKNOX1P55347 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PKNOX1P55347 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
PKNOX1P55347 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
PKNOX1P55347 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.25■□□□□ 0.99
PKNOX1P55347 AL499627.2-201ENST00000606283 725 ntBASIC21.25■□□□□ 0.99
PKNOX1P55347 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PKNOX1P55347 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.25■□□□□ 0.99
PKNOX1P55347 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.24■□□□□ 0.99
PKNOX1P55347 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.24■□□□□ 0.99
PKNOX1P55347 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.24■□□□□ 0.99
PKNOX1P55347 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.24■□□□□ 0.99
PKNOX1P55347 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.24■□□□□ 0.99
PKNOX1P55347 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
PKNOX1P55347 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKNOX1P55347 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.24■□□□□ 0.99
PKNOX1P55347 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PKNOX1P55347 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.23■□□□□ 0.99
PKNOX1P55347 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 AC026310.3-201ENST00000625186 2373 ntBASIC21.23■□□□□ 0.99
PKNOX1P55347 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PKNOX1P55347 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.23■□□□□ 0.99
PKNOX1P55347 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.23■□□□□ 0.99
PKNOX1P55347 UNC93B8-201ENST00000511903 705 ntBASIC21.23■□□□□ 0.99
PKNOX1P55347 AL117332.1-201ENST00000622628 974 ntBASIC21.23■□□□□ 0.99
PKNOX1P55347 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PKNOX1P55347 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PKNOX1P55347 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
PKNOX1P55347 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKNOX1P55347 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKNOX1P55347 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKNOX1P55347 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
PKNOX1P55347 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKNOX1P55347 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.22■□□□□ 0.99
PKNOX1P55347 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.22■□□□□ 0.99
PKNOX1P55347 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PKNOX1P55347 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKNOX1P55347 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.22■□□□□ 0.99
PKNOX1P55347 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PKNOX1P55347 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.21■□□□□ 0.99
PKNOX1P55347 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PKNOX1P55347 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PKNOX1P55347 AC241377.3-202ENST00000626088 1088 ntBASIC21.21■□□□□ 0.99
PKNOX1P55347 AC241585.3-202ENST00000628937 1088 ntBASIC21.21■□□□□ 0.99
PKNOX1P55347 AC245100.8-202ENST00000629247 1058 ntBASIC21.21■□□□□ 0.99
PKNOX1P55347 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms