Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CLTCL1P53675 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CLTCL1P53675 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CLTCL1P53675 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC31.53■■■□□ 2.64
CLTCL1P53675 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLTCL1P53675 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC31.53■■■□□ 2.64
CLTCL1P53675 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC31.53■■■□□ 2.64
CLTCL1P53675 AC104187.1-201ENST00000607510 612 ntBASIC31.53■■■□□ 2.64
CLTCL1P53675 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLTCL1P53675 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC31.53■■■□□ 2.64
CLTCL1P53675 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC31.53■■■□□ 2.64
CLTCL1P53675 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLTCL1P53675 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLTCL1P53675 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
CLTCL1P53675 EMC9-206ENST00000560403 872 ntTSL 2 BASIC31.53■■■□□ 2.64
CLTCL1P53675 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLTCL1P53675 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
CLTCL1P53675 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
CLTCL1P53675 LINC01960-201ENST00000563759 1884 ntBASIC31.52■■■□□ 2.64
CLTCL1P53675 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CLTCL1P53675 UBE2DNL-204ENST00000602536 740 ntBASIC31.52■■■□□ 2.64
CLTCL1P53675 AL050303.2-201ENST00000619798 666 ntBASIC31.52■■■□□ 2.64
CLTCL1P53675 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CLTCL1P53675 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC31.51■■■□□ 2.64
CLTCL1P53675 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
CLTCL1P53675 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.51■■■□□ 2.63
CLTCL1P53675 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
CLTCL1P53675 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC31.51■■■□□ 2.63
CLTCL1P53675 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC31.5■■■□□ 2.63
CLTCL1P53675 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC31.5■■■□□ 2.63
CLTCL1P53675 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC31.5■■■□□ 2.63
CLTCL1P53675 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC31.5■■■□□ 2.63
CLTCL1P53675 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CLTCL1P53675 DUSP8P5-201ENST00000422884 1815 ntBASIC31.5■■■□□ 2.63
CLTCL1P53675 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CLTCL1P53675 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC31.5■■■□□ 2.63
CLTCL1P53675 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
CLTCL1P53675 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC31.49■■■□□ 2.63
CLTCL1P53675 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLTCL1P53675 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC31.49■■■□□ 2.63
CLTCL1P53675 TESC-206ENST00000541210 936 ntTSL 3 BASIC31.49■■■□□ 2.63
CLTCL1P53675 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC31.49■■■□□ 2.63
CLTCL1P53675 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC31.49■■■□□ 2.63
CLTCL1P53675 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLTCL1P53675 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC31.49■■■□□ 2.63
CLTCL1P53675 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLTCL1P53675 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC31.49■■■□□ 2.63
CLTCL1P53675 SPI1-203ENST00000533030 661 ntTSL 2 BASIC31.49■■■□□ 2.63
CLTCL1P53675 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLTCL1P53675 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLTCL1P53675 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC31.48■■■□□ 2.63
CLTCL1P53675 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CLTCL1P53675 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CLTCL1P53675 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
CLTCL1P53675 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
CLTCL1P53675 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC31.48■■■□□ 2.63
CLTCL1P53675 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC31.48■■■□□ 2.63
CLTCL1P53675 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC31.48■■■□□ 2.63
CLTCL1P53675 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CLTCL1P53675 MAP2K4P1-201ENST00000438453 1195 ntBASIC31.47■■■□□ 2.63
CLTCL1P53675 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC31.47■■■□□ 2.63
CLTCL1P53675 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CLTCL1P53675 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
CLTCL1P53675 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
CLTCL1P53675 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CLTCL1P53675 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CLTCL1P53675 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CLTCL1P53675 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC31.46■■■□□ 2.63
CLTCL1P53675 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
CLTCL1P53675 ESRRAP2-201ENST00000418437 1549 ntBASIC31.46■■■□□ 2.63
CLTCL1P53675 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLTCL1P53675 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLTCL1P53675 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLTCL1P53675 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC31.46■■■□□ 2.63
CLTCL1P53675 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC31.46■■■□□ 2.63
CLTCL1P53675 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC31.46■■■□□ 2.63
CLTCL1P53675 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLTCL1P53675 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLTCL1P53675 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC31.45■■■□□ 2.62
CLTCL1P53675 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLTCL1P53675 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
CLTCL1P53675 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLTCL1P53675 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLTCL1P53675 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLTCL1P53675 AC006970.2-201ENST00000450065 779 ntBASIC31.44■■■□□ 2.62
CLTCL1P53675 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLTCL1P53675 AC011767.1-201ENST00000617410 1153 ntBASIC31.44■■■□□ 2.62
CLTCL1P53675 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC31.44■■■□□ 2.62
CLTCL1P53675 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLTCL1P53675 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC31.43■■■□□ 2.62
CLTCL1P53675 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
CLTCL1P53675 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC31.43■■■□□ 2.62
CLTCL1P53675 KRT18P11-201ENST00000435214 1283 ntBASIC31.43■■■□□ 2.62
CLTCL1P53675 AC009237.3-201ENST00000393279 1427 ntBASIC31.43■■■□□ 2.62
CLTCL1P53675 MFF-207ENST00000409565 1548 ntTSL 2 BASIC31.43■■■□□ 2.62
CLTCL1P53675 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC31.43■■■□□ 2.62
CLTCL1P53675 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC31.43■■■□□ 2.62
CLTCL1P53675 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC31.42■■■□□ 2.62
CLTCL1P53675 AC055733.4-201ENST00000638462 1354 ntBASIC31.42■■■□□ 2.62
CLTCL1P53675 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms