Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 LINC01529-204ENST00000636474 1715 ntBASIC20.53■□□□□ 0.88
CLK3P49761 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLK3P49761 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.52■□□□□ 0.88
CLK3P49761 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLK3P49761 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CLK3P49761 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.52■□□□□ 0.87
CLK3P49761 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLK3P49761 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CLK3P49761 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CLK3P49761 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.51■□□□□ 0.87
CLK3P49761 AC131281.2-201ENST00000520478 145 ntBASIC20.51■□□□□ 0.87
CLK3P49761 AL512631.2-201ENST00000604634 923 ntBASIC20.51■□□□□ 0.87
CLK3P49761 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.51■□□□□ 0.87
CLK3P49761 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.51■□□□□ 0.87
CLK3P49761 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLK3P49761 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLK3P49761 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.5■□□□□ 0.87
CLK3P49761 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.5■□□□□ 0.87
CLK3P49761 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLK3P49761 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CLK3P49761 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.5■□□□□ 0.87
CLK3P49761 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.5■□□□□ 0.87
CLK3P49761 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLK3P49761 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.49■□□□□ 0.87
CLK3P49761 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 AL136116.3-201ENST00000402907 1138 ntBASIC20.49■□□□□ 0.87
CLK3P49761 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.49■□□□□ 0.87
CLK3P49761 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.49■□□□□ 0.87
CLK3P49761 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.49■□□□□ 0.87
CLK3P49761 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.49■□□□□ 0.87
CLK3P49761 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.49■□□□□ 0.87
CLK3P49761 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.49■□□□□ 0.87
CLK3P49761 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CLK3P49761 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.49■□□□□ 0.87
CLK3P49761 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.49■□□□□ 0.87
CLK3P49761 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLK3P49761 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.48■□□□□ 0.87
CLK3P49761 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CLK3P49761 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CLK3P49761 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.48■□□□□ 0.87
CLK3P49761 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.48■□□□□ 0.87
CLK3P49761 DUX4L19-201ENST00000557448 1267 ntBASIC20.48■□□□□ 0.87
CLK3P49761 DUX4L4-201ENST00000566884 1269 ntBASIC20.48■□□□□ 0.87
CLK3P49761 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CLK3P49761 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.48■□□□□ 0.87
CLK3P49761 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CLK3P49761 RNF165-205ENST00000588679 2904 ntBASIC20.48■□□□□ 0.87
CLK3P49761 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.48■□□□□ 0.87
CLK3P49761 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLK3P49761 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.48■□□□□ 0.87
CLK3P49761 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
CLK3P49761 FBXW4P1-201ENST00000426721 2239 ntBASIC20.47■□□□□ 0.87
CLK3P49761 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.47■□□□□ 0.87
CLK3P49761 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLK3P49761 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
CLK3P49761 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLK3P49761 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLK3P49761 MIR4466-201ENST00000606121 54 ntBASIC20.47■□□□□ 0.87
CLK3P49761 AC009086.3-201ENST00000623486 1008 ntBASIC20.47■□□□□ 0.87
CLK3P49761 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLK3P49761 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
CLK3P49761 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLK3P49761 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLK3P49761 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CLK3P49761 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
CLK3P49761 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLK3P49761 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms