Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.1■□□□□ 0.65
SOX2P48431 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.1■□□□□ 0.65
SOX2P48431 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.1■□□□□ 0.65
SOX2P48431 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.1■□□□□ 0.65
SOX2P48431 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SOX2P48431 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SOX2P48431 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
SOX2P48431 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.09■□□□□ 0.65
SOX2P48431 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.09■□□□□ 0.65
SOX2P48431 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SOX2P48431 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.09■□□□□ 0.65
SOX2P48431 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.09■□□□□ 0.65
SOX2P48431 AC012354.3-201ENST00000623734 483 ntBASIC19.09■□□□□ 0.65
SOX2P48431 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.09■□□□□ 0.65
SOX2P48431 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX2P48431 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SOX2P48431 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SOX2P48431 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SOX2P48431 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SOX2P48431 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SOX2P48431 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
SOX2P48431 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.08■□□□□ 0.64
SOX2P48431 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.08■□□□□ 0.64
SOX2P48431 MIR6722-201ENST00000617286 78 ntBASIC19.08■□□□□ 0.64
SOX2P48431 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.08■□□□□ 0.64
SOX2P48431 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.08■□□□□ 0.64
SOX2P48431 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX2P48431 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
SOX2P48431 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 AC004687.1-201ENST00000579003 1625 ntBASIC19.07■□□□□ 0.64
SOX2P48431 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SOX2P48431 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX2P48431 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX2P48431 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX2P48431 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX2P48431 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.07■□□□□ 0.64
SOX2P48431 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SOX2P48431 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SOX2P48431 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.06■□□□□ 0.64
SOX2P48431 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.06■□□□□ 0.64
SOX2P48431 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SOX2P48431 DUX4L4-201ENST00000566884 1269 ntBASIC19.06■□□□□ 0.64
SOX2P48431 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.06■□□□□ 0.64
SOX2P48431 AL031848.2-201ENST00000607670 837 ntBASIC19.06■□□□□ 0.64
SOX2P48431 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SOX2P48431 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.06■□□□□ 0.64
SOX2P48431 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SOX2P48431 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX2P48431 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.05■□□□□ 0.64
SOX2P48431 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.05■□□□□ 0.64
SOX2P48431 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SOX2P48431 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.05■□□□□ 0.64
SOX2P48431 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.05■□□□□ 0.64
SOX2P48431 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SOX2P48431 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX2P48431 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX2P48431 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.04■□□□□ 0.64
SOX2P48431 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.04■□□□□ 0.64
SOX2P48431 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.04■□□□□ 0.64
SOX2P48431 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms