Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.98■■□□□ 1.11
HADHAP40939 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.98■■□□□ 1.11
HADHAP40939 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 LINC01960-201ENST00000563759 1884 ntBASIC21.98■■□□□ 1.11
HADHAP40939 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HADHAP40939 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
HADHAP40939 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
HADHAP40939 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HADHAP40939 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HADHAP40939 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.97■■□□□ 1.11
HADHAP40939 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HADHAP40939 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HADHAP40939 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 AC136469.2-201ENST00000623944 1028 ntBASIC21.96■■□□□ 1.11
HADHAP40939 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.96■■□□□ 1.11
HADHAP40939 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.96■■□□□ 1.11
HADHAP40939 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.96■■□□□ 1.11
HADHAP40939 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.96■■□□□ 1.11
HADHAP40939 AC080038.3-201ENST00000623346 1952 ntBASIC21.96■■□□□ 1.11
HADHAP40939 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HADHAP40939 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
HADHAP40939 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.95■■□□□ 1.11
HADHAP40939 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.95■■□□□ 1.1
HADHAP40939 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
HADHAP40939 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.95■■□□□ 1.1
HADHAP40939 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.95■■□□□ 1.1
HADHAP40939 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 OR2I1P-207ENST00000453522 948 ntBASIC21.95■■□□□ 1.1
HADHAP40939 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.95■■□□□ 1.1
HADHAP40939 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.95■■□□□ 1.1
HADHAP40939 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.95■■□□□ 1.1
HADHAP40939 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.95■■□□□ 1.1
HADHAP40939 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HADHAP40939 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
HADHAP40939 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.94■■□□□ 1.1
HADHAP40939 AC019069.1-201ENST00000610008 1333 ntBASIC21.94■■□□□ 1.1
HADHAP40939 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
HADHAP40939 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
HADHAP40939 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HADHAP40939 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.93■■□□□ 1.1
HADHAP40939 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 UNC93B3-201ENST00000308076 687 ntBASIC21.93■■□□□ 1.1
HADHAP40939 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.93■■□□□ 1.1
HADHAP40939 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HADHAP40939 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
HADHAP40939 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.93■■□□□ 1.1
HADHAP40939 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.93■■□□□ 1.1
HADHAP40939 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HADHAP40939 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HADHAP40939 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.92■■□□□ 1.1
HADHAP40939 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HADHAP40939 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
HADHAP40939 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.92■■□□□ 1.1
HADHAP40939 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HADHAP40939 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.92■■□□□ 1.1
HADHAP40939 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
HADHAP40939 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HADHAP40939 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms