Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
MSX2P35548 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
MSX2P35548 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX2P35548 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
MSX2P35548 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 KRT18P60-201ENST00000312876 1297 ntBASIC20.71■□□□□ 0.91
MSX2P35548 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
MSX2P35548 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.71■□□□□ 0.91
MSX2P35548 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
MSX2P35548 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.71■□□□□ 0.91
MSX2P35548 Z98882.1-201ENST00000622160 2253 ntBASIC20.71■□□□□ 0.91
MSX2P35548 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX2P35548 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
MSX2P35548 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX2P35548 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX2P35548 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
MSX2P35548 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.7■□□□□ 0.9
MSX2P35548 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX2P35548 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
MSX2P35548 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX2P35548 DUX4L18-201ENST00000553347 1267 ntBASIC20.7■□□□□ 0.9
MSX2P35548 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MSX2P35548 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
MSX2P35548 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.7■□□□□ 0.9
MSX2P35548 LINC01529-204ENST00000636474 1715 ntBASIC20.7■□□□□ 0.9
MSX2P35548 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.69■□□□□ 0.9
MSX2P35548 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
MSX2P35548 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.69■□□□□ 0.9
MSX2P35548 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.69■□□□□ 0.9
MSX2P35548 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.69■□□□□ 0.9
MSX2P35548 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
MSX2P35548 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.69■□□□□ 0.9
MSX2P35548 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.69■□□□□ 0.9
MSX2P35548 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.69■□□□□ 0.9
MSX2P35548 AC092667.1-201ENST00000434301 2586 ntBASIC20.69■□□□□ 0.9
MSX2P35548 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX2P35548 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
MSX2P35548 FEM1AP4-201ENST00000443167 1987 ntBASIC20.68■□□□□ 0.9
MSX2P35548 AC139795.1-202ENST00000500444 432 ntBASIC20.68■□□□□ 0.9
MSX2P35548 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.68■□□□□ 0.9
MSX2P35548 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.68■□□□□ 0.9
MSX2P35548 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.68■□□□□ 0.9
MSX2P35548 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSX2P35548 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.67■□□□□ 0.9
MSX2P35548 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
MSX2P35548 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.67■□□□□ 0.9
MSX2P35548 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
MSX2P35548 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
MSX2P35548 THA1P-201ENST00000590384 1145 ntBASIC20.67■□□□□ 0.9
MSX2P35548 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
MSX2P35548 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX2P35548 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.66■□□□□ 0.9
MSX2P35548 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSX2P35548 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSX2P35548 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MSX2P35548 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSX2P35548 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSX2P35548 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSX2P35548 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.66■□□□□ 0.9
MSX2P35548 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.66■□□□□ 0.9
MSX2P35548 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.66■□□□□ 0.9
MSX2P35548 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
MSX2P35548 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms