Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.29■■□□□ 1
SHMT2P34897 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SHMT2P34897 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.29■■□□□ 1
SHMT2P34897 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.28■■□□□ 1
SHMT2P34897 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SHMT2P34897 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.28■■□□□ 1
SHMT2P34897 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.28■■□□□ 1
SHMT2P34897 IGHV3-19-201ENST00000521488 291 ntBASIC21.28■■□□□ 1
SHMT2P34897 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHMT2P34897 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.28■■□□□ 1
SHMT2P34897 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
SHMT2P34897 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.28■■□□□ 1
SHMT2P34897 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.28■■□□□ 1
SHMT2P34897 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SHMT2P34897 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.27■■□□□ 1
SHMT2P34897 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.27■■□□□ 1
SHMT2P34897 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SHMT2P34897 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHMT2P34897 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHMT2P34897 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SHMT2P34897 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SHMT2P34897 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.26■□□□□ 0.99
SHMT2P34897 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.26■□□□□ 0.99
SHMT2P34897 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 AC087239.1-201ENST00000622671 572 ntBASIC21.26■□□□□ 0.99
SHMT2P34897 AL031602.1-201ENST00000633169 911 ntBASIC21.26■□□□□ 0.99
SHMT2P34897 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.26■□□□□ 0.99
SHMT2P34897 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHMT2P34897 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.26■□□□□ 0.99
SHMT2P34897 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHMT2P34897 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SHMT2P34897 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.25■□□□□ 0.99
SHMT2P34897 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.25■□□□□ 0.99
SHMT2P34897 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHMT2P34897 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHMT2P34897 C1orf229-201ENST00000623686 2258 ntBASIC21.25■□□□□ 0.99
SHMT2P34897 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.25■□□□□ 0.99
SHMT2P34897 TSPY26P-201ENST00000476365 1326 ntBASIC21.25■□□□□ 0.99
SHMT2P34897 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHMT2P34897 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SHMT2P34897 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.24■□□□□ 0.99
SHMT2P34897 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHMT2P34897 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.24■□□□□ 0.99
SHMT2P34897 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.24■□□□□ 0.99
SHMT2P34897 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.24■□□□□ 0.99
SHMT2P34897 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SHMT2P34897 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHMT2P34897 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.24■□□□□ 0.99
SHMT2P34897 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SHMT2P34897 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.23■□□□□ 0.99
SHMT2P34897 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.23■□□□□ 0.99
SHMT2P34897 ZNRF2P3-201ENST00000424200 374 ntBASIC21.23■□□□□ 0.99
SHMT2P34897 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.23■□□□□ 0.99
SHMT2P34897 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 LINC00526-201ENST00000581067 1875 ntBASIC21.23■□□□□ 0.99
SHMT2P34897 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHMT2P34897 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.23■□□□□ 0.99
SHMT2P34897 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.22■□□□□ 0.99
SHMT2P34897 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.22■□□□□ 0.99
SHMT2P34897 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.22■□□□□ 0.99
SHMT2P34897 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.22■□□□□ 0.99
SHMT2P34897 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHMT2P34897 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.22■□□□□ 0.99
SHMT2P34897 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.21■□□□□ 0.99
SHMT2P34897 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHMT2P34897 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SHMT2P34897 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHMT2P34897 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.21■□□□□ 0.99
SHMT2P34897 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.21■□□□□ 0.99
SHMT2P34897 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.21■□□□□ 0.99
SHMT2P34897 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SHMT2P34897 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms