Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH3P20585 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH3P20585 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH3P20585 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.62■■□□□ 1.05
MSH3P20585 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
MSH3P20585 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH3P20585 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH3P20585 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.62■■□□□ 1.05
MSH3P20585 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH3P20585 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSH3P20585 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
MSH3P20585 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
MSH3P20585 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH3P20585 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSH3P20585 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH3P20585 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
MSH3P20585 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
MSH3P20585 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH3P20585 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
MSH3P20585 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH3P20585 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
MSH3P20585 AC010141.3-201ENST00000456659 717 ntBASIC21.61■■□□□ 1.05
MSH3P20585 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH3P20585 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH3P20585 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH3P20585 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
MSH3P20585 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH3P20585 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH3P20585 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
MSH3P20585 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH3P20585 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
MSH3P20585 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH3P20585 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH3P20585 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.59■■□□□ 1.05
MSH3P20585 IGHV3-19-201ENST00000521488 291 ntBASIC21.59■■□□□ 1.05
MSH3P20585 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH3P20585 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH3P20585 AC087742.1-201ENST00000575880 1738 ntBASIC21.59■■□□□ 1.05
MSH3P20585 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH3P20585 GUSBP5-202ENST00000510805 1989 ntBASIC21.59■■□□□ 1.05
MSH3P20585 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
MSH3P20585 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH3P20585 TSPY26P-201ENST00000476365 1326 ntBASIC21.58■■□□□ 1.05
MSH3P20585 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH3P20585 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH3P20585 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
MSH3P20585 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
MSH3P20585 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH3P20585 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH3P20585 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
MSH3P20585 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH3P20585 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH3P20585 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
MSH3P20585 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH3P20585 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH3P20585 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH3P20585 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH3P20585 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH3P20585 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH3P20585 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH3P20585 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH3P20585 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH3P20585 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
MSH3P20585 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 ECEL1P1-201ENST00000373592 1742 ntBASIC21.56■■□□□ 1.04
MSH3P20585 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.56■■□□□ 1.04
MSH3P20585 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.56■■□□□ 1.04
MSH3P20585 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.56■■□□□ 1.04
MSH3P20585 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH3P20585 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
MSH3P20585 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 AC105265.2-201ENST00000467189 838 ntBASIC21.55■■□□□ 1.04
MSH3P20585 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.55■■□□□ 1.04
MSH3P20585 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH3P20585 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
MSH3P20585 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MSH3P20585 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH3P20585 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms