Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.33■■□□□ 1.01
TNFP01375 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TNFP01375 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TNFP01375 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.33■■□□□ 1
TNFP01375 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TNFP01375 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TNFP01375 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.33■■□□□ 1
TNFP01375 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
TNFP01375 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
TNFP01375 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
TNFP01375 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.32■■□□□ 1
TNFP01375 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.32■■□□□ 1
TNFP01375 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.32■■□□□ 1
TNFP01375 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.32■■□□□ 1
TNFP01375 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.32■■□□□ 1
TNFP01375 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.32■■□□□ 1
TNFP01375 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 AC093323.1-202ENST00000635031 2045 ntBASIC21.32■■□□□ 1
TNFP01375 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TNFP01375 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TNFP01375 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 AC004911.1-201ENST00000416316 871 ntBASIC21.31■■□□□ 1
TNFP01375 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.31■■□□□ 1
TNFP01375 AC079089.2-201ENST00000531211 1277 ntBASIC21.31■■□□□ 1
TNFP01375 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
TNFP01375 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.31■■□□□ 1
TNFP01375 AC092437.1-201ENST00000624794 1048 ntBASIC21.31■■□□□ 1
TNFP01375 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.31■■□□□ 1
TNFP01375 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.31■■□□□ 1
TNFP01375 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
TNFP01375 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TNFP01375 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TNFP01375 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.3■■□□□ 1
TNFP01375 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.3■■□□□ 1
TNFP01375 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.3■■□□□ 1
TNFP01375 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.3■■□□□ 1
TNFP01375 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
TNFP01375 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.3■■□□□ 1
TNFP01375 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TNFP01375 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.29■■□□□ 1
TNFP01375 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.29■■□□□ 1
TNFP01375 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.29■■□□□ 1
TNFP01375 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.29■■□□□ 1
TNFP01375 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.29■■□□□ 1
TNFP01375 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.29■■□□□ 1
TNFP01375 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TNFP01375 AC009237.3-201ENST00000393279 1427 ntBASIC21.29■■□□□ 1
TNFP01375 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.28■■□□□ 1
TNFP01375 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TNFP01375 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
TNFP01375 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TNFP01375 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.28■■□□□ 1
TNFP01375 RARRES2P11-201ENST00000635158 484 ntBASIC21.28■■□□□ 1
TNFP01375 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.28■■□□□ 1
TNFP01375 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
TNFP01375 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.28■■□□□ 1
TNFP01375 AP004607.4-201ENST00000530158 1459 ntBASIC21.27■■□□□ 1
TNFP01375 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.27■■□□□ 1
TNFP01375 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.27■■□□□ 1
TNFP01375 AC079140.4-201ENST00000507448 529 ntBASIC21.27■■□□□ 1
TNFP01375 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.27■■□□□ 1
TNFP01375 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.27■■□□□ 1
TNFP01375 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
TNFP01375 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TNFP01375 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TNFP01375 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.26■□□□□ 0.99
TNFP01375 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TNFP01375 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
TNFP01375 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.26■□□□□ 0.99
TNFP01375 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.26■□□□□ 0.99
TNFP01375 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.26■□□□□ 0.99
TNFP01375 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.26■□□□□ 0.99
TNFP01375 AC004854.2-201ENST00000608450 1441 ntBASIC21.26■□□□□ 0.99
TNFP01375 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TNFP01375 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TNFP01375 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TNFP01375 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 AC016769.1-201ENST00000409132 1010 ntBASIC21.25■□□□□ 0.99
TNFP01375 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 AC090192.1-201ENST00000517740 490 ntBASIC21.25■□□□□ 0.99
TNFP01375 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.25■□□□□ 0.99
TNFP01375 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
TNFP01375 AC005224.4-201ENST00000583262 1652 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms