Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
NPHP4O75161 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC31.19■■■□□ 2.58
NPHP4O75161 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC31.19■■■□□ 2.58
NPHP4O75161 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP4O75161 MKRN4P-201ENST00000444706 1521 ntBASIC31.19■■■□□ 2.58
NPHP4O75161 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP4O75161 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
NPHP4O75161 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
NPHP4O75161 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
NPHP4O75161 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC31.18■■■□□ 2.58
NPHP4O75161 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP4O75161 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC31.18■■■□□ 2.58
NPHP4O75161 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP4O75161 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
NPHP4O75161 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC31.17■■■□□ 2.58
NPHP4O75161 RPS2P4-201ENST00000476944 856 ntBASIC31.17■■■□□ 2.58
NPHP4O75161 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP4O75161 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC31.16■■■□□ 2.58
NPHP4O75161 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP4O75161 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC31.16■■■□□ 2.58
NPHP4O75161 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP4O75161 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC31.16■■■□□ 2.58
NPHP4O75161 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP4O75161 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP4O75161 AC009237.3-201ENST00000393279 1427 ntBASIC31.16■■■□□ 2.58
NPHP4O75161 MFF-207ENST00000409565 1548 ntTSL 2 BASIC31.16■■■□□ 2.58
NPHP4O75161 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC31.15■■■□□ 2.58
NPHP4O75161 ESRRAP1-201ENST00000400596 1257 ntBASIC31.15■■■□□ 2.58
NPHP4O75161 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC31.15■■■□□ 2.58
NPHP4O75161 SERP1-208ENST00000491660 830 ntTSL 2 BASIC31.15■■■□□ 2.58
NPHP4O75161 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC31.15■■■□□ 2.58
NPHP4O75161 AC013268.1-206ENST00000638368 961 ntBASIC31.15■■■□□ 2.58
NPHP4O75161 AC112229.1-201ENST00000639295 961 ntBASIC31.15■■■□□ 2.58
NPHP4O75161 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 AL158047.1-201ENST00000445918 881 ntBASIC31.15■■■□□ 2.58
NPHP4O75161 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP4O75161 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
NPHP4O75161 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP4O75161 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP4O75161 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP4O75161 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC31.14■■■□□ 2.58
NPHP4O75161 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
NPHP4O75161 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
NPHP4O75161 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP4O75161 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NPHP4O75161 AC010141.2-201ENST00000452426 721 ntBASIC31.14■■■□□ 2.58
NPHP4O75161 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
NPHP4O75161 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP4O75161 BAALC-201ENST00000297574 801 ntTSL 3 BASIC31.13■■■□□ 2.57
NPHP4O75161 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC31.13■■■□□ 2.57
NPHP4O75161 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
NPHP4O75161 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC31.13■■■□□ 2.57
NPHP4O75161 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP4O75161 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP4O75161 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP4O75161 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP4O75161 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC31.12■■■□□ 2.57
NPHP4O75161 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC31.12■■■□□ 2.57
NPHP4O75161 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC31.12■■■□□ 2.57
NPHP4O75161 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC31.12■■■□□ 2.57
NPHP4O75161 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP4O75161 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC31.12■■■□□ 2.57
NPHP4O75161 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC31.12■■■□□ 2.57
NPHP4O75161 AC068338.2-201ENST00000563278 1430 ntBASIC31.12■■■□□ 2.57
NPHP4O75161 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
NPHP4O75161 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP4O75161 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP4O75161 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP4O75161 MYC-209ENST00000641252 345 ntBASIC31.11■■■□□ 2.57
NPHP4O75161 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP4O75161 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC31.1■■■□□ 2.57
NPHP4O75161 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP4O75161 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP4O75161 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP4O75161 AC142381.4-202ENST00000563973 229 ntBASIC31.1■■■□□ 2.57
NPHP4O75161 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP4O75161 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP4O75161 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC31.09■■■□□ 2.57
NPHP4O75161 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC31.09■■■□□ 2.57
NPHP4O75161 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC31.09■■■□□ 2.57
NPHP4O75161 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC31.09■■■□□ 2.57
NPHP4O75161 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP4O75161 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NPHP4O75161 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC31.08■■■□□ 2.57
NPHP4O75161 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
NPHP4O75161 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP4O75161 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC31.08■■■□□ 2.57
NPHP4O75161 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC31.08■■■□□ 2.57
NPHP4O75161 KRT18P20-201ENST00000548986 1279 ntBASIC31.08■■■□□ 2.57
NPHP4O75161 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP4O75161 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP4O75161 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
NPHP4O75161 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
NPHP4O75161 AC093787.1-201ENST00000450396 207 ntBASIC31.07■■■□□ 2.57
NPHP4O75161 AC006058.3-201ENST00000606217 1069 ntBASIC31.07■■■□□ 2.57
NPHP4O75161 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms