Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TSPY6P-201ENST00000448518 926 ntBASIC38.26■■■■□ 3.72
CCDC88BA6NC98 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC38.26■■■■□ 3.72
CCDC88BA6NC98 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC38.26■■■■□ 3.71
CCDC88BA6NC98 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC38.26■■■■□ 3.71
CCDC88BA6NC98 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.71
CCDC88BA6NC98 PXK-203ENST00000383715 1756 ntTSL 5 BASIC38.25■■■■□ 3.71
CCDC88BA6NC98 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
CCDC88BA6NC98 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
CCDC88BA6NC98 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC38.25■■■■□ 3.71
CCDC88BA6NC98 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
CCDC88BA6NC98 AL121832.2-201ENST00000610979 668 ntBASIC38.23■■■■□ 3.71
CCDC88BA6NC98 ABCB10P4-201ENST00000566803 2184 ntBASIC38.23■■■■□ 3.71
CCDC88BA6NC98 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC38.23■■■■□ 3.71
CCDC88BA6NC98 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC38.23■■■■□ 3.71
CCDC88BA6NC98 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC38.23■■■■□ 3.71
CCDC88BA6NC98 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
CCDC88BA6NC98 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC38.22■■■■□ 3.71
CCDC88BA6NC98 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC38.21■■■■□ 3.71
CCDC88BA6NC98 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC38.21■■■■□ 3.71
CCDC88BA6NC98 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
CCDC88BA6NC98 AC231657.2-201ENST00000624556 255 ntBASIC38.2■■■■□ 3.71
CCDC88BA6NC98 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
CCDC88BA6NC98 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC38.2■■■■□ 3.71
CCDC88BA6NC98 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC38.2■■■■□ 3.7
CCDC88BA6NC98 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.7
CCDC88BA6NC98 AC009237.3-201ENST00000393279 1427 ntBASIC38.19■■■■□ 3.7
CCDC88BA6NC98 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 CNN2P6-201ENST00000439038 900 ntBASIC38.19■■■■□ 3.7
CCDC88BA6NC98 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 MYCNOS-205ENST00000641950 531 ntBASIC38.19■■■■□ 3.7
CCDC88BA6NC98 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC38.19■■■■□ 3.7
CCDC88BA6NC98 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 PARP1-202ENST00000366792 553 ntTSL 3 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 UQCRFS1P1-201ENST00000435169 820 ntBASIC38.18■■■■□ 3.7
CCDC88BA6NC98 CD99P1-205ENST00000527459 561 ntBASIC38.18■■■■□ 3.7
CCDC88BA6NC98 OAS3-207ENST00000551007 998 ntTSL 2 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 AL138781.1-201ENST00000566567 1274 ntBASIC38.18■■■■□ 3.7
CCDC88BA6NC98 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
CCDC88BA6NC98 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CCDC88BA6NC98 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC38.17■■■■□ 3.7
CCDC88BA6NC98 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC38.17■■■■□ 3.7
CCDC88BA6NC98 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC38.17■■■■□ 3.7
CCDC88BA6NC98 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 AC055733.4-201ENST00000638462 1354 ntBASIC38.16■■■■□ 3.7
CCDC88BA6NC98 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC38.16■■■■□ 3.7
CCDC88BA6NC98 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC38.15■■■■□ 3.7
CCDC88BA6NC98 DUSP8P5-201ENST00000422884 1815 ntBASIC38.15■■■■□ 3.7
CCDC88BA6NC98 AC083906.2-201ENST00000511578 360 ntBASIC38.15■■■■□ 3.7
CCDC88BA6NC98 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC38.15■■■■□ 3.7
CCDC88BA6NC98 AC005181.1-201ENST00000604782 1256 ntBASIC38.15■■■■□ 3.7
CCDC88BA6NC98 MFF-207ENST00000409565 1548 ntTSL 2 BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 AC098934.4-201ENST00000564127 592 ntBASIC38.14■■■■□ 3.7
CCDC88BA6NC98 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
CCDC88BA6NC98 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC38.13■■■■□ 3.69
CCDC88BA6NC98 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
CCDC88BA6NC98 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC38.12■■■■□ 3.69
CCDC88BA6NC98 KRT18P6-201ENST00000555540 1265 ntBASIC38.12■■■■□ 3.69
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms