Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB1Q9Y5F3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB1Q9Y5F3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB1Q9Y5F3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 BX842568.3-201ENST00000418104 571 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 MIR3181-201ENST00000578512 73 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 pRNA.6-201ENST00000610482 90 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 pRNA.5-201ENST00000612139 90 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 pRNA.11-201ENST00000618423 90 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 pRNA.13-201ENST00000619112 90 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 AC127496.7-201ENST00000625110 1798 ntBASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDHB1Q9Y5F3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB1Q9Y5F3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AL117328.2-201ENST00000624617 1940 ntBASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AC034268.1-201ENST00000441047 882 ntBASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 AC133637.1-201ENST00000624115 1537 ntBASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB1Q9Y5F3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 LINC01960-201ENST00000563759 1884 ntBASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 AC022517.1-201ENST00000592429 346 ntBASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 AL031602.1-201ENST00000633169 911 ntBASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB1Q9Y5F3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 AC087742.1-201ENST00000575880 1738 ntBASIC21.77■■□□□ 1.08
PCDHB1Q9Y5F3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 GUSBP5-202ENST00000510805 1989 ntBASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDHB1Q9Y5F3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 KRT18P5-201ENST00000436075 1291 ntBASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHB1Q9Y5F3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms