Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VSX1Q9NZR4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 AC006455.2-201ENST00000429931 906 ntBASIC19.46■□□□□ 0.71
VSX1Q9NZR4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.46■□□□□ 0.71
VSX1Q9NZR4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 pRNA.6-201ENST00000610482 90 ntBASIC19.45■□□□□ 0.7
VSX1Q9NZR4 pRNA.5-201ENST00000612139 90 ntBASIC19.45■□□□□ 0.7
VSX1Q9NZR4 pRNA.11-201ENST00000618423 90 ntBASIC19.45■□□□□ 0.7
VSX1Q9NZR4 pRNA.13-201ENST00000619112 90 ntBASIC19.45■□□□□ 0.7
VSX1Q9NZR4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 AC133637.1-201ENST00000624115 1537 ntBASIC19.45■□□□□ 0.7
VSX1Q9NZR4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VSX1Q9NZR4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 AC099791.2-201ENST00000605725 427 ntBASIC19.44■□□□□ 0.7
VSX1Q9NZR4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.44■□□□□ 0.7
VSX1Q9NZR4 PKD1P6-201ENST00000343738 4769 ntBASIC19.44■□□□□ 0.7
VSX1Q9NZR4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.44■□□□□ 0.7
VSX1Q9NZR4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VSX1Q9NZR4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 CLDN5-201ENST00000403084 2357 ntBASIC19.42■□□□□ 0.7
VSX1Q9NZR4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 AL031602.1-201ENST00000633169 911 ntBASIC19.42■□□□□ 0.7
VSX1Q9NZR4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VSX1Q9NZR4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms