Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.59■■□□□ 1.05
MKS1Q9NXB0 AC009102.2-201ENST00000606772 1639 ntBASIC21.58■■□□□ 1.05
MKS1Q9NXB0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
MKS1Q9NXB0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MKS1Q9NXB0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
MKS1Q9NXB0 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MKS1Q9NXB0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MKS1Q9NXB0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
MKS1Q9NXB0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MKS1Q9NXB0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 Z98882.1-201ENST00000622160 2253 ntBASIC21.57■■□□□ 1.04
MKS1Q9NXB0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
MKS1Q9NXB0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.56■■□□□ 1.04
MKS1Q9NXB0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 YBX1P4-201ENST00000392794 808 ntBASIC21.56■■□□□ 1.04
MKS1Q9NXB0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.56■■□□□ 1.04
MKS1Q9NXB0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
MKS1Q9NXB0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 AL031848.2-201ENST00000607670 837 ntBASIC21.54■■□□□ 1.04
MKS1Q9NXB0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
MKS1Q9NXB0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 C17orf82-201ENST00000623772 1530 ntBASIC21.53■■□□□ 1.04
MKS1Q9NXB0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.53■■□□□ 1.04
MKS1Q9NXB0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.52■■□□□ 1.04
MKS1Q9NXB0 AL499627.2-201ENST00000606283 725 ntBASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms