Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 AL592295.1-201ENST00000400984 884 ntBASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 ABHD17AP5-201ENST00000580133 923 ntBASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC4Q9NPD3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 AC087393.1-201ENST00000582896 145 ntBASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 AL353803.4-201ENST00000565882 1934 ntBASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
EXOSC4Q9NPD3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 AC131274.2-201ENST00000580697 1507 ntBASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 AC129492.7-201ENST00000622992 756 ntBASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.67■□□□□ 0.74
EXOSC4Q9NPD3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 AC010542.4-201ENST00000563151 1910 ntBASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC4Q9NPD3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 KRT18P60-201ENST00000312876 1297 ntBASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC4Q9NPD3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
EXOSC4Q9NPD3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC4Q9NPD3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC4Q9NPD3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC4Q9NPD3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC4Q9NPD3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EXOSC4Q9NPD3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 276.2 ms