Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AC103724.3-201ENST00000564481 992 ntBASIC20.77■□□□□ 0.92
PIF1Q9H611 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PIF1Q9H611 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PIF1Q9H611 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PIF1Q9H611 KRT8P33-201ENST00000508125 1423 ntBASIC20.77■□□□□ 0.91
PIF1Q9H611 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PIF1Q9H611 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PIF1Q9H611 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PIF1Q9H611 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PIF1Q9H611 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PIF1Q9H611 LINC01529-204ENST00000636474 1715 ntBASIC20.76■□□□□ 0.91
PIF1Q9H611 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PIF1Q9H611 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.76■□□□□ 0.91
PIF1Q9H611 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PIF1Q9H611 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PIF1Q9H611 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PIF1Q9H611 AC010542.4-201ENST00000563151 1910 ntBASIC20.76■□□□□ 0.91
PIF1Q9H611 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PIF1Q9H611 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.75■□□□□ 0.91
PIF1Q9H611 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.75■□□□□ 0.91
PIF1Q9H611 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.75■□□□□ 0.91
PIF1Q9H611 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.75■□□□□ 0.91
PIF1Q9H611 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.75■□□□□ 0.91
PIF1Q9H611 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.75■□□□□ 0.91
PIF1Q9H611 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PIF1Q9H611 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.75■□□□□ 0.91
PIF1Q9H611 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.74■□□□□ 0.91
PIF1Q9H611 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
PIF1Q9H611 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.74■□□□□ 0.91
PIF1Q9H611 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 LINC01960-201ENST00000563759 1884 ntBASIC20.74■□□□□ 0.91
PIF1Q9H611 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.74■□□□□ 0.91
PIF1Q9H611 AL031848.2-201ENST00000607670 837 ntBASIC20.74■□□□□ 0.91
PIF1Q9H611 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.74■□□□□ 0.91
PIF1Q9H611 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
PIF1Q9H611 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PIF1Q9H611 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.74■□□□□ 0.91
PIF1Q9H611 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PIF1Q9H611 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PIF1Q9H611 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.73■□□□□ 0.91
PIF1Q9H611 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PIF1Q9H611 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PIF1Q9H611 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PIF1Q9H611 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.73■□□□□ 0.91
PIF1Q9H611 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PIF1Q9H611 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.73■□□□□ 0.91
PIF1Q9H611 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.73■□□□□ 0.91
PIF1Q9H611 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.72■□□□□ 0.91
PIF1Q9H611 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.72■□□□□ 0.91
PIF1Q9H611 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.72■□□□□ 0.91
PIF1Q9H611 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.72■□□□□ 0.91
PIF1Q9H611 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PIF1Q9H611 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.71■□□□□ 0.91
PIF1Q9H611 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.71■□□□□ 0.91
PIF1Q9H611 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PIF1Q9H611 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PIF1Q9H611 RARRES2P1-201ENST00000474487 481 ntBASIC20.71■□□□□ 0.91
PIF1Q9H611 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.71■□□□□ 0.91
PIF1Q9H611 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
PIF1Q9H611 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PIF1Q9H611 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PIF1Q9H611 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.71■□□□□ 0.91
PIF1Q9H611 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PIF1Q9H611 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PIF1Q9H611 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PIF1Q9H611 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.71■□□□□ 0.91
PIF1Q9H611 AC005229.4-201ENST00000610085 2198 ntBASIC20.7■□□□□ 0.91
PIF1Q9H611 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.91
PIF1Q9H611 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms