Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TIMP4Q99727 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TIMP4Q99727 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.05■□□□□ 0.8
TIMP4Q99727 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TIMP4Q99727 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TIMP4Q99727 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.04■□□□□ 0.8
TIMP4Q99727 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.04■□□□□ 0.8
TIMP4Q99727 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
TIMP4Q99727 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.04■□□□□ 0.8
TIMP4Q99727 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.04■□□□□ 0.8
TIMP4Q99727 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.04■□□□□ 0.8
TIMP4Q99727 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.04■□□□□ 0.8
TIMP4Q99727 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP4Q99727 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
TIMP4Q99727 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP4Q99727 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP4Q99727 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP4Q99727 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.03■□□□□ 0.8
TIMP4Q99727 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.03■□□□□ 0.8
TIMP4Q99727 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
TIMP4Q99727 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.03■□□□□ 0.8
TIMP4Q99727 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.03■□□□□ 0.8
TIMP4Q99727 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP4Q99727 SLC47A1P1-202ENST00000449666 945 ntBASIC20.03■□□□□ 0.8
TIMP4Q99727 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 AC137767.1-201ENST00000602918 1920 ntBASIC20.03■□□□□ 0.8
TIMP4Q99727 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TIMP4Q99727 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP4Q99727 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
TIMP4Q99727 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.02■□□□□ 0.8
TIMP4Q99727 RARRES2P6-201ENST00000567333 442 ntBASIC20.02■□□□□ 0.8
TIMP4Q99727 AC126544.1-201ENST00000580842 1059 ntBASIC20.02■□□□□ 0.8
TIMP4Q99727 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
TIMP4Q99727 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP4Q99727 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
TIMP4Q99727 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TIMP4Q99727 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.01■□□□□ 0.79
TIMP4Q99727 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 IRS3P-201ENST00000223076 1006 ntBASIC20.01■□□□□ 0.79
TIMP4Q99727 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.01■□□□□ 0.79
TIMP4Q99727 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.01■□□□□ 0.79
TIMP4Q99727 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.01■□□□□ 0.79
TIMP4Q99727 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TIMP4Q99727 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP4Q99727 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TIMP4Q99727 AC079630.1-202ENST00000618127 1840 ntBASIC20■□□□□ 0.79
TIMP4Q99727 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TIMP4Q99727 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TIMP4Q99727 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20■□□□□ 0.79
TIMP4Q99727 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TIMP4Q99727 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.99■□□□□ 0.79
TIMP4Q99727 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.99■□□□□ 0.79
TIMP4Q99727 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.99■□□□□ 0.79
TIMP4Q99727 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
TIMP4Q99727 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.99■□□□□ 0.79
TIMP4Q99727 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
TIMP4Q99727 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
TIMP4Q99727 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP4Q99727 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TIMP4Q99727 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.98■□□□□ 0.79
TIMP4Q99727 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.98■□□□□ 0.79
TIMP4Q99727 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP4Q99727 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TIMP4Q99727 AC026271.2-201ENST00000428091 497 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms