Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDX2Q99626 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDX2Q99626 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.31
CDX2Q99626 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDX2Q99626 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDX2Q99626 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.26■■□□□ 1.31
CDX2Q99626 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDX2Q99626 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDX2Q99626 UBE2SP1-201ENST00000450587 669 ntBASIC23.26■■□□□ 1.31
CDX2Q99626 AC068587.7-201ENST00000641602 218 ntBASIC23.26■■□□□ 1.31
CDX2Q99626 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.26■■□□□ 1.31
CDX2Q99626 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDX2Q99626 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CDX2Q99626 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDX2Q99626 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDX2Q99626 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.25■■□□□ 1.31
CDX2Q99626 AC097658.1-201ENST00000475555 843 ntBASIC23.25■■□□□ 1.31
CDX2Q99626 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.25■■□□□ 1.31
CDX2Q99626 MIR4497-201ENST00000583208 89 ntBASIC23.25■■□□□ 1.31
CDX2Q99626 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.25■■□□□ 1.31
CDX2Q99626 MYC-209ENST00000641252 345 ntBASIC23.25■■□□□ 1.31
CDX2Q99626 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDX2Q99626 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.25■■□□□ 1.31
CDX2Q99626 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDX2Q99626 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CDX2Q99626 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.24■■□□□ 1.31
CDX2Q99626 CYP2T1P-201ENST00000432607 1285 ntBASIC23.24■■□□□ 1.31
CDX2Q99626 AC073648.6-201ENST00000641589 218 ntBASIC23.24■■□□□ 1.31
CDX2Q99626 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CDX2Q99626 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDX2Q99626 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDX2Q99626 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDX2Q99626 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
CDX2Q99626 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDX2Q99626 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.24■■□□□ 1.31
CDX2Q99626 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.23■■□□□ 1.31
CDX2Q99626 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.23■■□□□ 1.31
CDX2Q99626 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.23■■□□□ 1.31
CDX2Q99626 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDX2Q99626 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.23■■□□□ 1.31
CDX2Q99626 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.23■■□□□ 1.31
CDX2Q99626 LINC01023-201ENST00000606054 436 ntBASIC23.23■■□□□ 1.31
CDX2Q99626 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.23■■□□□ 1.31
CDX2Q99626 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDX2Q99626 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDX2Q99626 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.22■■□□□ 1.31
CDX2Q99626 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDX2Q99626 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDX2Q99626 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.22■■□□□ 1.31
CDX2Q99626 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDX2Q99626 AC010141.3-201ENST00000456659 717 ntBASIC23.22■■□□□ 1.31
CDX2Q99626 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CDX2Q99626 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.22■■□□□ 1.31
CDX2Q99626 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.22■■□□□ 1.31
CDX2Q99626 AC068338.2-201ENST00000563278 1430 ntBASIC23.22■■□□□ 1.31
CDX2Q99626 AC005224.4-201ENST00000583262 1652 ntBASIC23.22■■□□□ 1.31
CDX2Q99626 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 MIR718-201ENST00000390190 70 ntBASIC23.21■■□□□ 1.31
CDX2Q99626 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.21■■□□□ 1.31
CDX2Q99626 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.21■■□□□ 1.31
CDX2Q99626 AC013268.1-206ENST00000638368 961 ntBASIC23.21■■□□□ 1.31
CDX2Q99626 AC112229.1-201ENST00000639295 961 ntBASIC23.21■■□□□ 1.31
CDX2Q99626 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CDX2Q99626 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.2■■□□□ 1.3
CDX2Q99626 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
CDX2Q99626 BX276092.2-201ENST00000417668 665 ntBASIC23.2■■□□□ 1.3
CDX2Q99626 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
CDX2Q99626 AC093787.1-201ENST00000450396 207 ntBASIC23.2■■□□□ 1.3
CDX2Q99626 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDX2Q99626 OR10C1-204ENST00000622521 1039 ntBASIC23.2■■□□□ 1.3
CDX2Q99626 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.2■■□□□ 1.3
CDX2Q99626 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 AC144652.1-201ENST00000609974 1624 ntBASIC23.19■■□□□ 1.3
CDX2Q99626 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CDX2Q99626 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDX2Q99626 AC026366.1-201ENST00000488803 879 ntBASIC23.19■■□□□ 1.3
CDX2Q99626 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
CDX2Q99626 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.19■■□□□ 1.3
CDX2Q99626 UNC93B5-201ENST00000530315 699 ntBASIC23.19■■□□□ 1.3
CDX2Q99626 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.19■■□□□ 1.3
CDX2Q99626 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms