Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP9XQ93008 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP9XQ93008 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.32■□□□□ 0.68
USP9XQ93008 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.32■□□□□ 0.68
USP9XQ93008 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP9XQ93008 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP9XQ93008 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.32■□□□□ 0.68
USP9XQ93008 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.32■□□□□ 0.68
USP9XQ93008 AL158047.1-201ENST00000445918 881 ntBASIC19.32■□□□□ 0.68
USP9XQ93008 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.32■□□□□ 0.68
USP9XQ93008 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP9XQ93008 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP9XQ93008 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.31■□□□□ 0.68
USP9XQ93008 ECEL1P3-201ENST00000427961 737 ntBASIC19.31■□□□□ 0.68
USP9XQ93008 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.31■□□□□ 0.68
USP9XQ93008 AC128676.1-201ENST00000454392 318 ntBASIC19.31■□□□□ 0.68
USP9XQ93008 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.31■□□□□ 0.68
USP9XQ93008 HLA-L-211ENST00000482052 1765 ntBASIC19.31■□□□□ 0.68
USP9XQ93008 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.31■□□□□ 0.68
USP9XQ93008 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.31■□□□□ 0.68
USP9XQ93008 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP9XQ93008 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.31■□□□□ 0.68
USP9XQ93008 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP9XQ93008 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP9XQ93008 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP9XQ93008 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP9XQ93008 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP9XQ93008 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USP9XQ93008 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.3■□□□□ 0.68
USP9XQ93008 LINC01529-204ENST00000636474 1715 ntBASIC19.3■□□□□ 0.68
USP9XQ93008 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP9XQ93008 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.3■□□□□ 0.68
USP9XQ93008 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
USP9XQ93008 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
USP9XQ93008 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP9XQ93008 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.3■□□□□ 0.68
USP9XQ93008 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
USP9XQ93008 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP9XQ93008 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
USP9XQ93008 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP9XQ93008 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.29■□□□□ 0.68
USP9XQ93008 AC144652.1-201ENST00000609974 1624 ntBASIC19.29■□□□□ 0.68
USP9XQ93008 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP9XQ93008 UNC93B4-201ENST00000505679 747 ntBASIC19.29■□□□□ 0.68
USP9XQ93008 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP9XQ93008 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP9XQ93008 MKRN4P-201ENST00000444706 1521 ntBASIC19.29■□□□□ 0.68
USP9XQ93008 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP9XQ93008 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.29■□□□□ 0.68
USP9XQ93008 AC010536.3-201ENST00000620306 533 ntBASIC19.29■□□□□ 0.68
USP9XQ93008 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP9XQ93008 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP9XQ93008 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP9XQ93008 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.28■□□□□ 0.68
USP9XQ93008 MYC-209ENST00000641252 345 ntBASIC19.28■□□□□ 0.68
USP9XQ93008 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.27■□□□□ 0.68
USP9XQ93008 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP9XQ93008 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP9XQ93008 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.27■□□□□ 0.68
USP9XQ93008 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.27■□□□□ 0.68
USP9XQ93008 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.27■□□□□ 0.68
USP9XQ93008 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.27■□□□□ 0.68
USP9XQ93008 AC142381.4-202ENST00000563973 229 ntBASIC19.27■□□□□ 0.68
USP9XQ93008 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP9XQ93008 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.27■□□□□ 0.68
USP9XQ93008 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.27■□□□□ 0.68
USP9XQ93008 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP9XQ93008 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.27■□□□□ 0.67
USP9XQ93008 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.27■□□□□ 0.67
USP9XQ93008 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
USP9XQ93008 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.27■□□□□ 0.67
USP9XQ93008 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP9XQ93008 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP9XQ93008 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP9XQ93008 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP9XQ93008 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP9XQ93008 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.26■□□□□ 0.67
USP9XQ93008 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.26■□□□□ 0.67
USP9XQ93008 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
USP9XQ93008 AC142086.6-201ENST00000621154 1765 ntBASIC19.26■□□□□ 0.67
USP9XQ93008 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP9XQ93008 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.26■□□□□ 0.67
USP9XQ93008 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP9XQ93008 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP9XQ93008 AC211429.1-201ENST00000415277 523 ntBASIC19.26■□□□□ 0.67
USP9XQ93008 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
USP9XQ93008 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.26■□□□□ 0.67
USP9XQ93008 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.25■□□□□ 0.67
USP9XQ93008 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP9XQ93008 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.25■□□□□ 0.67
USP9XQ93008 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.25■□□□□ 0.67
USP9XQ93008 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms