Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 DUX4L18-201ENST00000553347 1267 ntBASIC19.43■□□□□ 0.7
CCDC58Q4VC31 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC58Q4VC31 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 FP325331.1-202ENST00000623531 1380 ntBASIC19.42■□□□□ 0.7
CCDC58Q4VC31 LINC01529-204ENST00000636474 1715 ntBASIC19.42■□□□□ 0.7
CCDC58Q4VC31 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC58Q4VC31 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 BHLHE23-202ENST00000612929 1109 ntBASIC19.41■□□□□ 0.7
CCDC58Q4VC31 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC58Q4VC31 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC58Q4VC31 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.39■□□□□ 0.7
CCDC58Q4VC31 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC58Q4VC31 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC58Q4VC31 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 SNX5-217ENST00000606557 1087 ntBASIC19.38■□□□□ 0.69
CCDC58Q4VC31 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC58Q4VC31 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 HSD17B1P1-201ENST00000590052 955 ntBASIC19.37■□□□□ 0.69
CCDC58Q4VC31 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC58Q4VC31 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms