Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.64■□□□□ 0.73
LSM3P62310 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LSM3P62310 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LSM3P62310 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM3P62310 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM3P62310 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.64■□□□□ 0.73
LSM3P62310 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM3P62310 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.63■□□□□ 0.73
LSM3P62310 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 AC244015.2-201ENST00000616358 1861 ntBASIC19.63■□□□□ 0.73
LSM3P62310 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.63■□□□□ 0.73
LSM3P62310 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.63■□□□□ 0.73
LSM3P62310 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 AC131274.2-201ENST00000580697 1507 ntBASIC19.63■□□□□ 0.73
LSM3P62310 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LSM3P62310 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.63■□□□□ 0.73
LSM3P62310 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
LSM3P62310 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM3P62310 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 AC092296.2-201ENST00000589470 999 ntBASIC19.62■□□□□ 0.73
LSM3P62310 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
LSM3P62310 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM3P62310 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LSM3P62310 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.61■□□□□ 0.73
LSM3P62310 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
LSM3P62310 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LSM3P62310 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LSM3P62310 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.61■□□□□ 0.73
LSM3P62310 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.61■□□□□ 0.73
LSM3P62310 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM3P62310 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LSM3P62310 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.6■□□□□ 0.73
LSM3P62310 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LSM3P62310 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.6■□□□□ 0.73
LSM3P62310 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.6■□□□□ 0.73
LSM3P62310 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM3P62310 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.6■□□□□ 0.73
LSM3P62310 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.59■□□□□ 0.73
LSM3P62310 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.59■□□□□ 0.73
LSM3P62310 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LSM3P62310 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.59■□□□□ 0.73
LSM3P62310 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
LSM3P62310 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.59■□□□□ 0.73
LSM3P62310 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM3P62310 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LSM3P62310 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LSM3P62310 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LSM3P62310 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM3P62310 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.58■□□□□ 0.72
LSM3P62310 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.58■□□□□ 0.72
LSM3P62310 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM3P62310 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LSM3P62310 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM3P62310 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM3P62310 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.58■□□□□ 0.72
LSM3P62310 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM3P62310 LINC01006-201ENST00000333319 2292 ntBASIC19.58■□□□□ 0.72
LSM3P62310 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.58■□□□□ 0.72
LSM3P62310 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
LSM3P62310 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM3P62310 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.57■□□□□ 0.72
LSM3P62310 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
LSM3P62310 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM3P62310 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM3P62310 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM3P62310 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM3P62310 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LSM3P62310 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms