Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.7■■□□□ 1.38
TTC3P53804 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.7■■□□□ 1.38
TTC3P53804 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.7■■□□□ 1.38
TTC3P53804 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.7■■□□□ 1.38
TTC3P53804 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TTC3P53804 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
TTC3P53804 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
TTC3P53804 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.69■■□□□ 1.38
TTC3P53804 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.69■■□□□ 1.38
TTC3P53804 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TTC3P53804 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TTC3P53804 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.68■■□□□ 1.38
TTC3P53804 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TTC3P53804 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.68■■□□□ 1.38
TTC3P53804 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
TTC3P53804 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
TTC3P53804 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
TTC3P53804 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
TTC3P53804 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
TTC3P53804 NCF1B-203ENST00000435988 1254 ntBASIC23.67■■□□□ 1.38
TTC3P53804 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.67■■□□□ 1.38
TTC3P53804 MFSD11-216ENST00000590393 1141 ntBASIC23.67■■□□□ 1.38
TTC3P53804 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.67■■□□□ 1.38
TTC3P53804 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TTC3P53804 AC005224.4-201ENST00000583262 1652 ntBASIC23.66■■□□□ 1.38
TTC3P53804 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TTC3P53804 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.66■■□□□ 1.38
TTC3P53804 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
TTC3P53804 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.66■■□□□ 1.38
TTC3P53804 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TTC3P53804 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
TTC3P53804 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TTC3P53804 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TTC3P53804 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.65■■□□□ 1.38
TTC3P53804 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.65■■□□□ 1.38
TTC3P53804 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.65■■□□□ 1.38
TTC3P53804 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.65■■□□□ 1.38
TTC3P53804 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
TTC3P53804 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
TTC3P53804 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
TTC3P53804 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TTC3P53804 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.64■■□□□ 1.38
TTC3P53804 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.64■■□□□ 1.38
TTC3P53804 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TTC3P53804 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TTC3P53804 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TTC3P53804 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.64■■□□□ 1.37
TTC3P53804 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TTC3P53804 ESRRAP2-201ENST00000418437 1549 ntBASIC23.64■■□□□ 1.37
TTC3P53804 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.64■■□□□ 1.37
TTC3P53804 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TTC3P53804 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TTC3P53804 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
TTC3P53804 AC006970.2-201ENST00000450065 779 ntBASIC23.63■■□□□ 1.37
TTC3P53804 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
TTC3P53804 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TTC3P53804 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TTC3P53804 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TTC3P53804 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
TTC3P53804 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.62■■□□□ 1.37
TTC3P53804 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
TTC3P53804 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
TTC3P53804 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TTC3P53804 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TTC3P53804 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
TTC3P53804 KRT87P-202ENST00000534226 1464 ntBASIC23.62■■□□□ 1.37
TTC3P53804 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TTC3P53804 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TTC3P53804 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.61■■□□□ 1.37
TTC3P53804 AL109923.1-201ENST00000618799 583 ntBASIC23.61■■□□□ 1.37
TTC3P53804 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TTC3P53804 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TTC3P53804 ABHD17AP1-201ENST00000358206 933 ntBASIC23.6■■□□□ 1.37
TTC3P53804 AL355802.2-201ENST00000402069 882 ntBASIC23.6■■□□□ 1.37
TTC3P53804 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
TTC3P53804 AC104187.1-201ENST00000607510 612 ntBASIC23.6■■□□□ 1.37
TTC3P53804 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
TTC3P53804 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
TTC3P53804 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.6■■□□□ 1.37
TTC3P53804 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
TTC3P53804 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TTC3P53804 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TTC3P53804 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TTC3P53804 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.6■■□□□ 1.37
TTC3P53804 AC079140.4-201ENST00000507448 529 ntBASIC23.6■■□□□ 1.37
TTC3P53804 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
TTC3P53804 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms