Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC30.67■■■□□ 2.5
MSH6P52701 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH6P52701 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
MSH6P52701 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH6P52701 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.66■■■□□ 2.5
MSH6P52701 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
MSH6P52701 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH6P52701 APTR-203ENST00000430801 583 ntTSL 5 BASIC30.66■■■□□ 2.5
MSH6P52701 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC30.66■■■□□ 2.5
MSH6P52701 MIR4758-201ENST00000577688 71 ntBASIC30.66■■■□□ 2.5
MSH6P52701 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
MSH6P52701 AP006294.2-201ENST00000641667 209 ntBASIC30.66■■■□□ 2.5
MSH6P52701 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
MSH6P52701 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
MSH6P52701 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
MSH6P52701 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
MSH6P52701 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
MSH6P52701 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
MSH6P52701 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
MSH6P52701 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
MSH6P52701 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
MSH6P52701 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC30.64■■■□□ 2.5
MSH6P52701 SLC7A5P1-201ENST00000568957 537 ntBASIC30.64■■■□□ 2.5
MSH6P52701 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
MSH6P52701 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
MSH6P52701 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
MSH6P52701 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
MSH6P52701 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
MSH6P52701 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
MSH6P52701 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
MSH6P52701 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC30.63■■■□□ 2.49
MSH6P52701 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC30.63■■■□□ 2.49
MSH6P52701 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH6P52701 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH6P52701 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC30.62■■■□□ 2.49
MSH6P52701 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
MSH6P52701 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
MSH6P52701 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH6P52701 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
MSH6P52701 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH6P52701 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
MSH6P52701 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.61■■■□□ 2.49
MSH6P52701 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH6P52701 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC30.61■■■□□ 2.49
MSH6P52701 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
MSH6P52701 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
MSH6P52701 DUSP5P2-201ENST00000426873 1033 ntBASIC30.61■■■□□ 2.49
MSH6P52701 GCSHP5-201ENST00000443090 522 ntBASIC30.61■■■□□ 2.49
MSH6P52701 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
MSH6P52701 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.6■■■□□ 2.49
MSH6P52701 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
MSH6P52701 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
MSH6P52701 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
MSH6P52701 AC005224.4-201ENST00000583262 1652 ntBASIC30.6■■■□□ 2.49
MSH6P52701 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC30.59■■■□□ 2.49
MSH6P52701 ASL-203ENST00000380839 1765 ntTSL 5 BASIC30.59■■■□□ 2.49
MSH6P52701 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH6P52701 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH6P52701 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH6P52701 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
MSH6P52701 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
MSH6P52701 RARRES2P4-201ENST00000514074 484 ntBASIC30.58■■■□□ 2.49
MSH6P52701 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC30.58■■■□□ 2.49
MSH6P52701 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
MSH6P52701 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
MSH6P52701 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH6P52701 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC30.57■■■□□ 2.48
MSH6P52701 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
MSH6P52701 RHEB-204ENST00000472642 900 ntTSL 3 BASIC30.57■■■□□ 2.48
MSH6P52701 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
MSH6P52701 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.57■■■□□ 2.48
MSH6P52701 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH6P52701 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
MSH6P52701 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
MSH6P52701 AL596275.1-201ENST00000423464 877 ntBASIC30.56■■■□□ 2.48
MSH6P52701 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC30.56■■■□□ 2.48
MSH6P52701 AP001160.3-201ENST00000601484 763 ntBASIC30.56■■■□□ 2.48
MSH6P52701 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
MSH6P52701 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH6P52701 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH6P52701 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC30.56■■■□□ 2.48
MSH6P52701 AC004687.1-201ENST00000579003 1625 ntBASIC30.56■■■□□ 2.48
MSH6P52701 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH6P52701 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
MSH6P52701 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH6P52701 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC30.55■■■□□ 2.48
MSH6P52701 PPP1R14BP2-201ENST00000426284 444 ntBASIC30.55■■■□□ 2.48
MSH6P52701 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC30.55■■■□□ 2.48
MSH6P52701 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
MSH6P52701 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH6P52701 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH6P52701 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.54■■■□□ 2.48
MSH6P52701 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
MSH6P52701 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC30.54■■■□□ 2.48
MSH6P52701 IRX5-204ENST00000560154 879 ntTSL 5 BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms