Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC026310.3-201ENST00000625186 2373 ntBASIC19.15■□□□□ 0.66
SOX2P48431 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX2P48431 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX2P48431 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.15■□□□□ 0.66
SOX2P48431 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SOX2P48431 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SOX2P48431 AC005703.6-201ENST00000623265 1329 ntBASIC19.15■□□□□ 0.66
SOX2P48431 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX2P48431 AC010542.4-201ENST00000563151 1910 ntBASIC19.15■□□□□ 0.66
SOX2P48431 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX2P48431 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SOX2P48431 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX2P48431 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.14■□□□□ 0.66
SOX2P48431 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
SOX2P48431 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.14■□□□□ 0.66
SOX2P48431 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SOX2P48431 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.14■□□□□ 0.65
SOX2P48431 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.14■□□□□ 0.65
SOX2P48431 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.14■□□□□ 0.65
SOX2P48431 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.14■□□□□ 0.65
SOX2P48431 AC103724.3-201ENST00000564481 992 ntBASIC19.14■□□□□ 0.65
SOX2P48431 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.14■□□□□ 0.65
SOX2P48431 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SOX2P48431 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.14■□□□□ 0.65
SOX2P48431 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SOX2P48431 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SOX2P48431 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SOX2P48431 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SOX2P48431 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
SOX2P48431 YBX1P4-201ENST00000392794 808 ntBASIC19.13■□□□□ 0.65
SOX2P48431 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.13■□□□□ 0.65
SOX2P48431 FP325331.1-202ENST00000623531 1380 ntBASIC19.13■□□□□ 0.65
SOX2P48431 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.13■□□□□ 0.65
SOX2P48431 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX2P48431 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SOX2P48431 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.12■□□□□ 0.65
SOX2P48431 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SOX2P48431 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.12■□□□□ 0.65
SOX2P48431 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.12■□□□□ 0.65
SOX2P48431 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SOX2P48431 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.12■□□□□ 0.65
SOX2P48431 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX2P48431 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
SOX2P48431 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.11■□□□□ 0.65
SOX2P48431 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SOX2P48431 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SOX2P48431 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SOX2P48431 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 AL033527.3-201ENST00000566366 1196 ntBASIC19.11■□□□□ 0.65
SOX2P48431 AC137630.3-201ENST00000607245 391 ntBASIC19.11■□□□□ 0.65
SOX2P48431 AC009086.3-201ENST00000623486 1008 ntBASIC19.11■□□□□ 0.65
SOX2P48431 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.11■□□□□ 0.65
SOX2P48431 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.11■□□□□ 0.65
SOX2P48431 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX2P48431 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms