Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC22.33■■□□□ 1.17
SLC6A11P48066 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SLC6A11P48066 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.33■■□□□ 1.17
SLC6A11P48066 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.33■■□□□ 1.17
SLC6A11P48066 AC137761.2-201ENST00000561729 223 ntBASIC22.33■■□□□ 1.17
SLC6A11P48066 AC145350.3-201ENST00000569033 163 ntBASIC22.33■■□□□ 1.17
SLC6A11P48066 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.33■■□□□ 1.17
SLC6A11P48066 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
SLC6A11P48066 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SLC6A11P48066 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.33■■□□□ 1.17
SLC6A11P48066 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
SLC6A11P48066 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SLC6A11P48066 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC6A11P48066 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.32■■□□□ 1.16
SLC6A11P48066 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SLC6A11P48066 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC6A11P48066 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC6A11P48066 AC006015.1-201ENST00000429970 570 ntBASIC22.32■■□□□ 1.16
SLC6A11P48066 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.32■■□□□ 1.16
SLC6A11P48066 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.32■■□□□ 1.16
SLC6A11P48066 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.32■■□□□ 1.16
SLC6A11P48066 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.32■■□□□ 1.16
SLC6A11P48066 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC6A11P48066 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC6A11P48066 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.32■■□□□ 1.16
SLC6A11P48066 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC6A11P48066 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC6A11P48066 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC6A11P48066 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC6A11P48066 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.31■■□□□ 1.16
SLC6A11P48066 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
SLC6A11P48066 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.31■■□□□ 1.16
SLC6A11P48066 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.31■■□□□ 1.16
SLC6A11P48066 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.31■■□□□ 1.16
SLC6A11P48066 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SLC6A11P48066 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
SLC6A11P48066 AC080038.1-201ENST00000611274 1154 ntBASIC22.31■■□□□ 1.16
SLC6A11P48066 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.31■■□□□ 1.16
SLC6A11P48066 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC6A11P48066 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
SLC6A11P48066 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
SLC6A11P48066 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.3■■□□□ 1.16
SLC6A11P48066 AC016769.1-201ENST00000409132 1010 ntBASIC22.3■■□□□ 1.16
SLC6A11P48066 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.3■■□□□ 1.16
SLC6A11P48066 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.3■■□□□ 1.16
SLC6A11P48066 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.3■■□□□ 1.16
SLC6A11P48066 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SLC6A11P48066 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC6A11P48066 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SLC6A11P48066 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
SLC6A11P48066 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.29■■□□□ 1.16
SLC6A11P48066 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.29■■□□□ 1.16
SLC6A11P48066 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC6A11P48066 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SLC6A11P48066 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC6A11P48066 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC6A11P48066 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.28■■□□□ 1.16
SLC6A11P48066 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 ID1-201ENST00000376105 1233 ntBASIC22.28■■□□□ 1.16
SLC6A11P48066 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SLC6A11P48066 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
SLC6A11P48066 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.28■■□□□ 1.16
SLC6A11P48066 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.28■■□□□ 1.16
SLC6A11P48066 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.28■■□□□ 1.16
SLC6A11P48066 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC6A11P48066 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.27■■□□□ 1.16
SLC6A11P48066 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.27■■□□□ 1.16
SLC6A11P48066 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.27■■□□□ 1.16
SLC6A11P48066 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.27■■□□□ 1.16
SLC6A11P48066 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.27■■□□□ 1.16
SLC6A11P48066 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
SLC6A11P48066 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.27■■□□□ 1.16
SLC6A11P48066 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
SLC6A11P48066 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC6A11P48066 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
SLC6A11P48066 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
SLC6A11P48066 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.26■■□□□ 1.15
SLC6A11P48066 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
SLC6A11P48066 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC6A11P48066 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC6A11P48066 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
SLC6A11P48066 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SLC6A11P48066 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.26■■□□□ 1.15
SLC6A11P48066 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms