Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.22■□□□□ 0.67
SGCEO43556 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SGCEO43556 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SGCEO43556 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SGCEO43556 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SGCEO43556 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SGCEO43556 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SGCEO43556 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SGCEO43556 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.21■□□□□ 0.67
SGCEO43556 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.21■□□□□ 0.67
SGCEO43556 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.21■□□□□ 0.67
SGCEO43556 DUX4L19-201ENST00000557448 1267 ntBASIC19.21■□□□□ 0.67
SGCEO43556 AC087742.1-201ENST00000575880 1738 ntBASIC19.21■□□□□ 0.67
SGCEO43556 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.21■□□□□ 0.67
SGCEO43556 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 SLC25A24-204ENST00000569674 2357 ntBASIC19.21■□□□□ 0.67
SGCEO43556 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SGCEO43556 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SGCEO43556 SYT6-210ENST00000641643 1587 ntBASIC19.2■□□□□ 0.66
SGCEO43556 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SGCEO43556 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SGCEO43556 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SGCEO43556 AL136116.3-201ENST00000402907 1138 ntBASIC19.2■□□□□ 0.66
SGCEO43556 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.2■□□□□ 0.66
SGCEO43556 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.2■□□□□ 0.66
SGCEO43556 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SGCEO43556 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.2■□□□□ 0.66
SGCEO43556 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.19■□□□□ 0.66
SGCEO43556 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.19■□□□□ 0.66
SGCEO43556 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.19■□□□□ 0.66
SGCEO43556 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SGCEO43556 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SGCEO43556 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SGCEO43556 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SGCEO43556 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SGCEO43556 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SGCEO43556 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.19■□□□□ 0.66
SGCEO43556 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SGCEO43556 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SGCEO43556 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
SGCEO43556 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.18■□□□□ 0.66
SGCEO43556 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SGCEO43556 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SGCEO43556 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.17■□□□□ 0.66
SGCEO43556 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
SGCEO43556 AC242852.2-201ENST00000615738 1807 ntBASIC19.17■□□□□ 0.66
SGCEO43556 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
SGCEO43556 AL138724.1-201ENST00000606771 1088 ntBASIC19.17■□□□□ 0.66
SGCEO43556 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SGCEO43556 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SGCEO43556 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SGCEO43556 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SGCEO43556 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SGCEO43556 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SGCEO43556 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 SERBP1P1-201ENST00000396021 1160 ntBASIC19.16■□□□□ 0.66
SGCEO43556 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
SGCEO43556 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.16■□□□□ 0.66
SGCEO43556 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SGCEO43556 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.16■□□□□ 0.66
SGCEO43556 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SGCEO43556 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SGCEO43556 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
SGCEO43556 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SGCEO43556 PKD1P6-201ENST00000343738 4769 ntBASIC19.15■□□□□ 0.66
SGCEO43556 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SGCEO43556 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms