Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 TSPY9P-201ENST00000440215 945 ntBASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 TSPY11P-201ENST00000442607 1045 ntBASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 AL499627.2-201ENST00000606283 725 ntBASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHA3Q9Y5H8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHA3Q9Y5H8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
PCDHA3Q9Y5H8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
PCDHA3Q9Y5H8 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.89■■□□□ 1.26
PCDHA3Q9Y5H8 AL451085.2-201ENST00000605085 799 ntBASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDHA3Q9Y5H8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHA3Q9Y5H8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 MIR6724-1-201ENST00000616420 92 ntBASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 MIR6724-2-201ENST00000616483 92 ntBASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 MIR6724-4-201ENST00000617390 92 ntBASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 MIR6724-3-201ENST00000622482 92 ntBASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
PCDHA3Q9Y5H8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 AL137060.1-201ENST00000618151 2648 ntBASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 UNC93B8-201ENST00000511903 705 ntBASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHA3Q9Y5H8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 AC010542.4-201ENST00000563151 1910 ntBASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHA3Q9Y5H8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms