Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHB3Q9Y5E6 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PCDHB3Q9Y5E6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 AC137767.1-201ENST00000602918 1920 ntBASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 AC008764.7-201ENST00000593779 1081 ntBASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 MIR6821-201ENST00000617625 74 ntBASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHB3Q9Y5E6 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHB3Q9Y5E6 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHB3Q9Y5E6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 IRS3P-201ENST00000223076 1006 ntBASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 AC097381.1-201ENST00000429019 1296 ntBASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.34■■□□□ 1.01
PCDHB3Q9Y5E6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 pRNA.6-201ENST00000610482 90 ntBASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 pRNA.5-201ENST00000612139 90 ntBASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 pRNA.11-201ENST00000618423 90 ntBASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 pRNA.13-201ENST00000619112 90 ntBASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHB3Q9Y5E6 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.33■■□□□ 1
PCDHB3Q9Y5E6 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.33■■□□□ 1
PCDHB3Q9Y5E6 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
PCDHB3Q9Y5E6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.33■■□□□ 1
PCDHB3Q9Y5E6 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms