Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRC42Q9Y546 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRC42Q9Y546 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.64■□□□□ 0.9
LRRC42Q9Y546 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC42Q9Y546 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LRRC42Q9Y546 AC087289.5-201ENST00000586076 3175 ntBASIC20.64■□□□□ 0.89
LRRC42Q9Y546 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LRRC42Q9Y546 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRC42Q9Y546 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
LRRC42Q9Y546 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 AC126177.7-201ENST00000547904 679 ntBASIC20.61■□□□□ 0.89
LRRC42Q9Y546 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC42Q9Y546 AL353803.4-201ENST00000565882 1934 ntBASIC20.61■□□□□ 0.89
LRRC42Q9Y546 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC42Q9Y546 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms