Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLCF1Q9UBD9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLCF1Q9UBD9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L2-201ENST00000561772 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 AC092666.2-201ENST00000613287 246 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L6-201ENST00000626483 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L1-201ENST00000627662 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L8-201ENST00000629013 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L3-201ENST00000630187 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L7-201ENST00000630678 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUX4L5-201ENST00000630834 1275 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 DUSP8P3-201ENST00000399571 1760 ntBASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLCF1Q9UBD9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 CCDC92B-201ENST00000575506 885 ntBASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLCF1Q9UBD9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 LINC02228-203ENST00000641970 1355 ntBASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CLCF1Q9UBD9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 TERF1P2-201ENST00000583350 1212 ntBASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCF1Q9UBD9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 OXCT2P1-201ENST00000447263 1535 ntBASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.47■□□□□ 0.71
CLCF1Q9UBD9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 SMUG1P1-201ENST00000590640 811 ntBASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 TPRG1LP1-201ENST00000598702 760 ntBASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CLCF1Q9UBD9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.45■□□□□ 0.7
CLCF1Q9UBD9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms