Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 AL355001.2-201ENST00000620617 1191 ntBASIC23.42■■□□□ 1.34
CISHQ9NSE2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CISHQ9NSE2 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CISHQ9NSE2 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.41■■□□□ 1.34
CISHQ9NSE2 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
CISHQ9NSE2 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CISHQ9NSE2 AC233723.2-201ENST00000623798 2106 ntBASIC23.41■■□□□ 1.34
CISHQ9NSE2 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CISHQ9NSE2 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CISHQ9NSE2 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
CISHQ9NSE2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
CISHQ9NSE2 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
CISHQ9NSE2 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
CISHQ9NSE2 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
CISHQ9NSE2 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 AP001330.3-201ENST00000520123 633 ntBASIC23.4■■□□□ 1.34
CISHQ9NSE2 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.4■■□□□ 1.34
CISHQ9NSE2 AC008764.7-201ENST00000593779 1081 ntBASIC23.4■■□□□ 1.34
CISHQ9NSE2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CISHQ9NSE2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CISHQ9NSE2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
CISHQ9NSE2 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.39■■□□□ 1.33
CISHQ9NSE2 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.39■■□□□ 1.33
CISHQ9NSE2 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
CISHQ9NSE2 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CISHQ9NSE2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 MIR638-201ENST00000385237 100 ntBASIC23.38■■□□□ 1.33
CISHQ9NSE2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 AC068587.7-201ENST00000641602 218 ntBASIC23.38■■□□□ 1.33
CISHQ9NSE2 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
CISHQ9NSE2 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CISHQ9NSE2 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CISHQ9NSE2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CISHQ9NSE2 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CISHQ9NSE2 AC127496.7-201ENST00000625110 1798 ntBASIC23.37■■□□□ 1.33
CISHQ9NSE2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 MIR939-201ENST00000401314 82 ntBASIC23.37■■□□□ 1.33
CISHQ9NSE2 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 SUDS3P1-201ENST00000505831 966 ntBASIC23.37■■□□□ 1.33
CISHQ9NSE2 AF213884.3-201ENST00000563833 479 ntBASIC23.37■■□□□ 1.33
CISHQ9NSE2 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.37■■□□□ 1.33
CISHQ9NSE2 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CISHQ9NSE2 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CISHQ9NSE2 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CISHQ9NSE2 AC099791.1-201ENST00000416440 715 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 AP005435.1-201ENST00000529293 1178 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 AC027682.1-201ENST00000562846 899 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CISHQ9NSE2 CA15P2-201ENST00000611168 834 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 AC005837.3-201ENST00000612163 286 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 AL136967.2-201ENST00000623968 743 ntBASIC23.36■■□□□ 1.33
CISHQ9NSE2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.36■■□□□ 1.33
CISHQ9NSE2 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CISHQ9NSE2 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
CISHQ9NSE2 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.33
CISHQ9NSE2 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CISHQ9NSE2 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CISHQ9NSE2 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CISHQ9NSE2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CISHQ9NSE2 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CISHQ9NSE2 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CISHQ9NSE2 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.34■■□□□ 1.33
CISHQ9NSE2 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CISHQ9NSE2 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.34■■□□□ 1.33
CISHQ9NSE2 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms